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Detailed information on CNT30100463


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691387Oryza rufipogonOryza sativa61.6514.04100667forward
CNT30595715Oryza rufipogonOryza meridionalis61.654797.3667forward
CNT30107393Oryza rufipogonOryza longistaminata61.7448.1698.95668forward
CNT30575447Oryza rufipogonOryza barthii44.0920.9899.58477forward
CNT30603597Oryza rufipogonOryza punctata56.0146.490.92606forward

Expression of CNT30100463

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MEAGTCFDKVDIILMVLLNLLINKNIFISMDASATRQLQMNSSTYEHLAR*

>peptide 2 (49 aa)
ARARARAPSSRRVRRPDPAHAPPPFEPPSPAPPRATARRSRTDLVNSPP*

>peptide 3 (45 aa)
PRARAPARRPHAASAAQIRRTLLPLLSRHRRHRRARRRGAAAPIS*

>peptide 4 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGMVTSLWQQLHILQENL*

Sequence

>CNT30100463
CCGCGCGCGCGCGCGCCCGCGCGCCGTCCTCACGCCGCGTCCGCCGCCCAGATCCGGCGCACGCTCCTCCCCCTTTTGAGCCGCCATCGCCGGCACCGCC
GCGCGCGACGGCGCGGCGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCAGCCACCACCTAAATCGCAATGCCTT
TCTCCGCTAGCTCCCGCCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGATGGTGACAAGCTTGTGGCA
GCAACTGCACATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCC
TTTGCCAAAACTATCAAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAA
TGATTAATAACAAAACTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGGTACATGTTTTGA
CAAGGTTGACATTATCTTAATGGTTCTTCTAAATCTTTTGATTAACAAAAATATATTTATTTCCATGGATGCTAGTGCCACCAGGCAATTGCAAATGAAC
TCATCAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGATTACGTCGTCTCTACATTGTGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCA
TGACATGCTTGCTTGGAAGGGCAATTTTGAGTTGATCATGAGGTTTGCATGAATTTCTCTAGGAATGCCCAGTGAGTGATCCTGTAAATTTTGGAGTTGA
TTGTTCATCAGAATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGTAGCGGAACGTTCATTGTCCCATGCTACTCAGCTTTGTACTTTTGTAAATCAA
ATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAAGCAAATGAAAAATTCCAGCTTTT