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Detailed information on CNT30100438


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002741, E-value = 2e-153

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691190Oryza rufipogonOryza sativa58.6973.0993.29834reverse complement
CNT30110571Oryza rufipogonOryza longistaminata100.0722.6194.371422forward

Expression of CNT30100438

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MYLNLAAFLCSGVLIVDLELSSRVSCPCLSKKISWLRARHLHLVASY*

>peptide 2 (42 aa)
MKIMVSFYQTFLVFSLDASFSILSFKPYYFRWISLFSKVLLY*

>peptide 3 (89 aa)
MLHFPSFRLNHIIFVGFLCFRKFYCIDVFDMLFGFMKIVVCLSERFIGFSVDAFENFVRIYACLFVKGKYMLAFKPCGFFVSNVSRFLP*

>peptide 4 (29 aa)
MVRDSKTSILEKSYKHVKSIISYCYRKTA*

Sequence

>CNT30100438
TGCACATAATGAGACCGTCCTGATGCATCCAATATGACTTGACAAATATTCCTAGAACACCATAGATTAGATTGCATATGACTAACTAGCACCCGGAGAA
CAAATATTGCCAACCCCTAAGATGTAACCCAAAGTTTTGTTCAATTTATCCTTATTTATCCTTATTTTCCCAACTATTTTCCCAACCGTCTTACTTGCTG
TCCTAAAACTTAAATTTATCGAATGTGAGATCAACAAGGTTAGATCATGACCTTAGACCATGAAGACTTGAACCTTGTCACATCCTAATGGTTAGAGATT
CTAAAACTAGTATTCTTGAAAAGTCTTATAAACATGTAAAATCAATAATATCATATTGTTATCGGAAAACAGCATAGCCATGACACCTTAGATCGTATTC
CACCAACCAAACAAGGATAGGTTCTCATACCACCCCCACCAAAGACAAAATCATCGTAAGAGCCACATAAATAATATGAATTCCTAAGTAGGCTGACCCA
TATTCGAAAAGGAAATAGTTGCATGTATTTAAACCTTGCAGCTTTCTTGTGCTCTGGCGTTTTGATCGTAGACTTAGAACTAAGTTCAAGAGTTTCATGT
CCCTGTTTATCGAAAAAAATATCTTGGTTACGGGCTAGACATCTACATTTGGTTGCATCCTATTGATTTTATGAGAACCGTAGTTTGCTTGTTCGGAACG
ATTTATTGGTTTCTCCGTTGACGCTTCATTTTTAATCCATAACTTTTCGTGAGCTGCACCCTTGCATTTTGTTGCACATCTATGCCTTTATGAAAATCAT
GGTTTCATTTTATCAAACATTTCTAGTTTTCTCCCTTGATGCTTCATTTTCCATCCTTTCGTTTAAACCATATTATTTTCGTTGGATTTCTTTGTTTTCG
AAAGTTCTATTGTATTGATGTTTTTGACATGCTATTTGGTTTTATGAAAATCGTAGTATGCTTGTCCGAACGATTTATTGGTTTCTCCGTTGACGCTTTC
GAAAATTTTGTTCGAATATATGCTTGCTTGTTTGTGAAAGGAAAATATATGCTTGCATTTAAACCTTGCGGCTTTTTTGTATCAAACGTTTCTAGGTTTC
TCCCTTGATGTTTCATTTTCCGTCCTTTCGTTGAATCTTACTTTTGTTTCTTGCGTAACGGTTTTTTTTTCAACATTAAGTTTCAACTTGGTACTTTAAG
TTTGATTTCTTAAGTTACAAATTCTCTCTTTTTGGAACTTCTCTTTGGACTTTAAAGCTTTATTTTAGTTTGTGAAATTTTGTATGAACTTATGCTTACT
AGTTTGTGAAAAGAAAATATTTGCTTGTATTTAATCCTTACGGCTTTTTTGTGCTCCAACGTTTTAATAGTAGACTTATAACTAATTTAATTTCTATAGT
TATGTTACCCTGTTTATCGAA