Detailed information on CNT30100403


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001792, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552847Oryza rufipogonOryza glaberrima44.7262.5396.24559forward
CNT30596942Oryza rufipogonOryza meridionalis28.4832.3695.79356forward
CNT30371082Oryza rufipogonOryza glumipatula31.672.2194.43395forward

Expression of CNT30100403

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLLIRVSTHIQIHDVIHVSLFRMFCLHYSRTMRSHGSAIWIFIHDP*

>peptide 2 (54 aa)
MAMTLCYLFVFRPIFKFMTLFMFHYSECSVYIIQEPCVAMGVQFGSLFMILEKR*

>peptide 3 (37 aa)
MVLIVWFISVLTFLITACRDVRIFKGDSAEISNNFRT*

>peptide 4 (39 aa)
LVSLDSDKRFRRNSKNSTADRVRKSDSSSFFLNLGFSEA*

>peptide 5 (35 aa)
MYVVTWGVTVGIRAGGRSMGSDWVMRYINQHKILN*

Sequence

>CNT30100403
CTAGTTTCACTCGATTCCGATAAACGGTTTAGGAGAAACAGCAAAAACAGTACTGCTGACCGGGTCCGGAAATCAGACAGCAGTTCGTTTTTCCTTAATC
TGGGATTTTCAGAGGCATAATCTGATTTTGTGCTCAACATGAAAGTTGTAGACAATTTTGTCTAGATGTCCGAAGTTGTATTATTTGCTAGTTTCCGTTA
GACGGTTTGTGAGTTACTCATAAAACAGTAATGGAACAGCTATAGGTTATTTAATACAAATCGGTAAAAGGTTTATATGTTCTAGGTTTCGATTTTAGTA
AATATCCCTTGTAACCATCGTTAGTTGAATATAGTGGTTTATCCGTAGTTTTGCTCCACAGGTGTGGAGGGTTCCAACGTTGGAGGAGTTGAGTCGGAGT
ATCGAATTAGTTAAGGCAAGTACAAGACGGACTTATGTGATGGACAAAACTGAGTTGTTTTGTTTGGCTTTACTTGCATAATTATTATTCAATTGCTTGT
TATTACTGATTGTATGGCTATGACGTTATGCTACTTATTCGTGTTTCGACCCATATTCAAATTCATGACGTTATTCATGTTTCATTATTCCGAATGTTCT
GTTTACATTATTCAAGAACCATGCGTAGCCATGGGAGTGCAATTTGGATCTTTATTCATGATCCTTGAGAAGCGCTGATCACGCTTGCTCGGCTTACCGG
TACCTAATGACATCGATCGGCATGGGGCGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACAATTGAAATTAGTTTTAGACTATAATTTTTGCT
CAGCATAAGTTTTGCATAGAACTTGTAAAGGTCATTTAAGGTTCTGATCCTTATTTTTCACGTGGGATTTGTGGAGCTAGGATGGTTTTGATTGTGTGGT
TTATATCGGTATTGACCTTTCTTATAACTGCCTGTCGTGATGTCCGTATTTTTAAGGGAGATTCTGCCGAAATTTCTAATAATTTTAGGACTTAGTTTTT
GAGTGTATTTTGGTGTGGCATTCTATGTACGTGGTTACCTGGGGTGTTACAGTTGGTATCAGAGCGGGCGGTAGGTCCATGGGAAGTGACTGGGTAATGA
GATATATAAATCAACATAAAATTTTGAACTAGAGTTCCTAACCAATTAAAAAAAATACTTTCTCTTAGGGTAGGAAATAATAAGAGTAGAACTTGGGTTA
TATATAAACATCTAAAAGAACTTGACACACTGGTGCACAATAGGAATGGG