CANTATAdb - search

Detailed information on CNT30100385

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002745, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694266	Oryza rufipogon	Oryza sativa	72.33	67.75	97.86	983	forward
CNT30108528	Oryza rufipogon	Oryza longistaminata	48.34	99.7	97.72	657	reverse complement
CNT30575705	Oryza rufipogon	Oryza barthii	92.72	71.47	98.1	1260	reverse complement
CNT30117644	Oryza rufipogon	Oryza nivara	92.72	71.63	97.62	1260	reverse complement

Expression of CNT30100385

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MLSTKSDYASENPRLRKNELLSDFRTRSAVLFLLFLLNRLSESSETSTVG

>peptide 2 (52 aa)
ILKVHYLSLTIMTKCSSMLFPFTNGKSVWFGCYCNTPGNHVHRMPHQNTLKN*

>peptide 3 (59 aa)
MKGCIYFIFKPKKSKDSSSLPGRCEYPLSITGKPSKRDQRFSRIMNKDPNCTPMATHGS*

>peptide 4 (31 aa)
MESPFGLAVTVTPQVTTYIECHTKIHSKTKS*

Sequence

>CNT30100385
CATTTTAAAAGTTCATTATTTGTCATTGACAATAATGACAAAATGCTCTAGTATGTTGTTTCCATTTACAAATGGAAAGTCCGTTTGGTTTGGCTGTTAC
TGTAACACCCCAGGTAACCACGTACATAGAATGCCACACCAAAATACACTCAAAAACTAAGTCCTAAAATTATTAGAAATTTCGGCAGAATCTCCCTTAA
AAATACGGACATCACGACAGGCAGTTATAAGAAAGGTCAATACCGATATAAACCACACAATCCAAACCATCCTAGCTCCCTCCACAAATCCCACGTGAAA
AATAAGGATCAGAACCTTAAATGACCTTTACAAGTTCTATGCAAAACTTATGCTGAGCAAAAATTATAGTCTAAAACTAATTTCAATTGTGTGCAATAAT
AACGTGTAGTCCAAGGGTGCTACTCCCGCCCCATGCCGATCGATGTCATTAGGTACCTAAAAACCAAATTAAACATAAGAGTGAGTAAAGAATACTCAGC
AAGTACAATCTTGAACTAGTAAAACATACGCATGATTTATGCATTAAGAAACCAACATGAAGGGTTGTATTTACTTTATTTTTAAACCAAAGAAGTCAAA
AGATAGTAGTTCCCTCCCGGGCAGGTGTGAATATCCTCTTAGCATTACCGGTAAGCCGAGCAAGCGTGATCAGCGCTTCTCAAGGATCATGAATAAAGAT
CCAAATTGCACTCCCATGGCTACGCATGGTTCTTGAATAATGTAAACAGAACATTCGGAATAATGAAACATGAATAACGTCATGAATTTGAATATGGGTC
GAAACACGAATAAGTAGCATAACGTCATAGCCATACAATCAGTAATAACAAGCAATTGAATAATAATTATGCAAGTAAAGCCAAACAAAACAACTCAGTT
TTGTCCATCACATAAGTCCGTCTTGTACTTGCCTTAACTAATTCGATACTCCGACTCAACTCCTCCAACGTTGGAACCCTCCACACCTGTGGAGCAAAAC
TACGGATAAACCACTATATTCAACTAACGATGGTTACAAGGGATATTTACTAAAATCGAAACCTAGAACATATAAACCTTTTACCGATTTGTATTAAATA
ACCTATAGCTGTTCCATTACTGTTTTATGAGTAACTCACAAACCGTCTAACGGAAACTAGCAAATAATACAACTTCGGACATCTAGACAAAATTGTCTAC
AACTTTCATGTTGAGCACAAAATCAGATTATGCCTCTGAAAATCCCAGATTAAGGAAAAACGAACTGCTGTCTGATTTCCGGACCCGGTCAGCAGTACTG
TTTTTGCTGTTTCTCCTAAACCGTTTATCGGAATCGAGTGAAACTAGTACCGTTGGAAA