Detailed information on CNT30100381


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30105215Oryza rufipogonOryza longistaminata307.3398.57210forward

Expression of CNT30100381

Peptides detected in this lncRNA

>peptide 1 (58 aa)
THLLPLLSFSRSSSLLHALSQRRRSHRRSTSRRPLLPASGSRPAVTAGQNRFRGSPRI*

>peptide 2 (32 aa)
MQPAANSGEIRTQESFPDLHYCCDPYSSLLPL*

>peptide 3 (71 aa)
PTFFLFSLFLVLLLSFTLSPSAAAHTAAPPHAARCSLPPAAAPQSPPARIDSVAPHESNPQAKPNFQPPQP*

>peptide 4 (82 aa)
NPPSSSSLFFSFFFSPSRSLPAPPLTPPLHLTPPAAPCLRQPPRSHRRPESIPWLPTNLTPKLNLTSNLLSPRCSRRPTPAR*

Sequence

>CNT30100381
AACCCACCTTCTTCCTCTTCTCTCTTTTTCTCGTTCTTCTTCTCTCCTTCACGCTCTCTCCCAGCGCCGCCGCTCACACCGCCGCTCCACCTCACGCCGC
CCGCTGCTCCCTGCCTCCGGCAGCCGCCCCGCAGTCACCGCCGGCCAGAATCGATTCCGTGGCTCCCCACGAATCTAACCCCCAAGCTAAACCTAACTTC
CAACCTCCTCAGCCCTAGATGCAGCCGGCGGCCAACTCCGGCGAGATAAGGACTCAAGAAAGTTTTCCTGACCTCCACTACTGCTGCGACCCCTACTCCT
CTCTTCTACCTCTCTAATCCCTAATGTGTTGTACTGGTTGCTACTCCTCCTAGAGTTTGTTTGGCACCTTTTTGAGATGAAATCCCTTGCTTCCTCCTGA
GCTTGAGCTGAAACCCCTTGCTCCACTTGTAAATCAGGTGAAAATTTGTCGACAAATGTATAGGTGGTCCCCATTGGTTTGTCTCGTTGGCTAGAGGATG
TGCACAAGGAGGTATGATGCAGCAAGGCAAAGGTGGTTGGTTAAGTCAAAGGCGTGACTCAGCGGAGGCAACACGGTAATTGGCGAGAAATTCCCGAGCA
ACAGTGGATGAAAATCATTGAGGGCGTCAACGGGCTGTTTGGCAGTACATGATATATCCAGGATCTGCGGGGATTGCATGATGGGGATATATGGAATCTG