Detailed information on CNT30100373


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002795, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520108Oryza rufipogonSetaria italica14.7433.3397.06102reverse complement
CNT30591229Oryza rufipogonMusa acuminata10.1222.0887.1470reverse complement
CNT30459519Oryza rufipogonSaccharum spontaneum16.1837.3395.54112forward

Expression of CNT30100373

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MRGGRKLRLLLHPHQRHLHLLLPRAPLLPPLQGRRRRRHRRLLILPCPEIHSPANYGVER*

>peptide 2 (67 aa)
MLLMFLVTVDAYATALYQASIFSFTAFHPHFRVQHIQLEIKRKILGWMCKIFSCSAFSTDVLDGCDM*

>peptide 3 (94 aa)
WIRPSNRFIHHQGGEARTLARMLMLRWRVERKSEDRLLQDKEFDKRYGVGWQCVVGANFGCFFTHTSGTFIYFSLERLSFLLFKAAAAAAIAAS*

>peptide 4 (40 aa)
LDPPVESIHPSPRRRSTHASSHVDVALEGGAEVGGPASPR*

Sequence

>CNT30100373
CTGGATCCGCCCGTCGAATCGATTCATCCATCACCAAGGAGGCGAAGCACGCACGCTAGCTCGCATGTTGATGTTGCGCTGGAGGGTGGAGCGGAAGTCG
GAGGACCGGCTTCTCCAAGATAAGGAGTTCGACAAGAGGTACGGGGTGGGGTGGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTCTTCACCCACACCA
GCGGCACCTTCATCTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCCGCCGCCGCCGCCGCCATCGCCGCCTCCTAATCCTTCCATGCCCG
GAGATCCATTCGCCGGCGAACTACGGCGTCGAGCGATAGCAAGAGAAGAGACCAACTTATGTACGTACGTAAGAATGTAATGTAAGCTAGCTCAGATGCG
CCCCATTTGTACATACACCATGCTTGTGCAATCTTTGCCTTCTCCTTCTTGATGCTGCTCATGTTCTTGGTCACCGTGGACGCCTACGCCACAGCCTTGT
ATCAAGCTTCCATTTTCAGTTTTACAGCGTTTCATCCCCACTTCCGAGTTCAGCACATTCAGCTTGAAATCAAGAGAAAAATCCTTGGCTGGATGTGCAA
GATCTTTTCTTGCAGTGCATTCAGTACTGACGTTTTGGATGGATGTGACATGTGAATTGCGATCGAGATGAACTTTTCCATGTACCTTTTCT