CANTATAdb - search

Detailed information on CNT30100368

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690919	Oryza rufipogon	Oryza sativa	41.59	100	100	230	forward
CNT30116139	Oryza rufipogon	Oryza nivara	100	78.77	99.82	553	forward

Expression of CNT30100368

Peptides detected in this lncRNA

>peptide 1 (36 aa)
RSPERRQVSKSKPERDAKPWSPKKTKGSRTAKIIEN*

>peptide 2 (34 aa)
PLTRASSSLKVQTRERRETLEPQENERLTNCQDN*

>peptide 3 (32 aa)
AHQSVVKSQSPNQRETRNPGAPRKRKAHELPR*

Sequence

>CNT30100368
CCGCTCACCAGAGCGTCGTCAAGTCTCAAAGTCCAAACCAGAGAGAGACGCGAAACCCTGGAGCCCCAAGAAAACGAAAGGCTCACGAACTGCCAAGATA
ATTGAAAATTAAAACCGGACGAAGTGGGGGCTAGTGGTGGTTGCGGTTTGGCAAGAACAGCCGCGCCCTGGAGATCGGCGTCGCGTGGCTAGTATGGGCC
GCTAACTAATCAAAATTACCAACACGCACGCACACACCCATCGAAAGCAAAGAAAAGCCTCCTAATTGATATTATACTAATCAAGAAACAGAAAAGGCAG
GGGCGGAGAGAGCTGTCTGCTTCGCTGCCCGCCGAATCTGGTGCCCGCGAGCAGAGCAGGCTTAGGGAGGAAGGCAACCGGAGCAGAGCAGCTCGCTTTG
CTGGCGGAGAAGTGGGGGTCGCGGCGGCGGCGGCAGCGGCAGCGAGGCAGCGCGAAGCTGGGAGTTTGGCAGGGAAGGGGAGGGAAGGAAGGGATGATGT
CAATAGCCTCGTTTGCAAAAACCGTTGTGCAGGGAAGCACCGGAAGCTTTCGC