Detailed information on CNT30100349


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3089385Oryza rufipogonVigna radiata30.2219.3291.1868forward
CNT30319789Oryza rufipogonAsparagus officinalis58.2262.9883.97131forward
CNT30147808Oryza rufipogonBrachypodium distachyon37.335.685.7184forward
CNT30175669Oryza rufipogonVigna angularis2414.4894.4454reverse complement

Expression of CNT30100349

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MCTREKFPGRSPIPNYSRPSTLNPGVLWRLASGKE

>peptide 2 (73 aa)
YCNVPPPPGRAHLHLIAFIGHRLPSQTNTYLFCTLCPHSCAPGKNFPVGHPSQITPGQARLTLEFFGDWLPEKK

Sequence

>CNT30100349
CATATTGTAACGTCCCGCCTCCCCCAGGCCGGGCCCACTTACATCTGATAGCTTTCATAGGTCATAGACTGCCCTCACAGACCAACACATATCTTTTCTG
CACACTTTGTCCTCACTCATGTGCACCCGGGAAAAATTTCCCGGTCGGTCACCCATCCCAAATTACTCCAGGCCAAGCACGCTTAACCCTGGAGTTCTTT
GGAGATTGGCTTCCGGAAAAGAAGT