CANTATAdb - search

Detailed information on CNT30100344

BLAST search results

BLAST vs Swiss-Prot:
sp|Q43872|PER64_ARATH, E-value = 1e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690858	Oryza rufipogon	Oryza sativa	15.16	74.1	100	206	forward
CNT30595841	Oryza rufipogon	Oryza meridionalis	52.02	98.88	99.01	707	forward
CNT30575460	Oryza rufipogon	Oryza barthii	52.54	47.38	100	714	forward
CNT30115810	Oryza rufipogon	Oryza nivara	49.74	46.46	100	676	forward

Expression of CNT30100344

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MQAGRITMATASLAASARMSAQETTPGQRASTAALALSMT*

>peptide 2 (54 aa)
MPLPAAALHRSIRLRATVLLIKLCMYVYLVRTHSALALELARLLDKNNTIWYWK*

>peptide 3 (55 aa)
MQAEQAGRHRAVFGHGLLHRRRHRRLRLGAALGVVVQAQRLAATHQHRHSHHHND*

Sequence

>CNT30100344
GGAAAATTAAAATTAGTAACAAATTAAAAGATGCTATAGCCATTCGACGTTATATTGTTGTTGTACATAAGTTGAGTTGAGTTGAGGCCATACATGCAGT
GCAGGGATGGTGTGGTGGATAAGATAAGATAGTGTGATCGATATGATGCTAGTGGAAATAGCTAGCTAGTTGACGCGCCTGCAGTTGGCTCGGACCTCGC
CGGCGACGTTGTTGAGGGAGCTCATCCGTAGCATGGAGTCGACGAAGTCACGGAAGAAGGCGGGCTGCGACGCGGCGTAGAGCGTGACCTGGGCGCGCGT
CTTGGGGTGGGTGAGCAGCGCCTCGTCGGAGGAGAGAAGGCCACGGCCGGAGAGCAGCATCCGATAGTAGAAGTTGTCGAAGGCGGAGGAGGTGGGGTCG
AGGGAGGAGCCGGCAGACCTGGCGGTGTTGTTGGGTGGGCAGGAGCGGCGGAGGGTGGCGGCGAAGGAGGGGTGAAGCGCGGGGTCGACGCCCTGCGGCT
GGATGCGGTTCTGGAAGGAGGAGCAGTGTGCGAAGCCAAGCGTGTGACCCCCCGACAGCACCACCAGGTCCTTGGTCGACATCCCGCGCCCGTGGAACGC
CTGCTTCAGCTGGTCGAAGCTCGCCGTCGGCCCCGGTAGCGCCGTCGTCGTCTCGCTCGCCAGCGACACGCGCCCGTCACGACGACCCACCGGCACTTGC
CAAGAAGGACCACCGGACTGCATGCAGGCCGGCCGGATTACCATGGCGACTGCGTCCCTGGCGGCCAGCGCGAGGATGTCAGCGCAGGAGACGACGCCGG
GGCAGAGGGCTTCGACGGCGGCCTTGGCGTTGTCGATGACGTAGAAGGCGTGCAGCGACGCGTTGGGTGGGCCGTCCTTCTCCGCCGACATGTTCCCCGA
CGAGTCCAAAAGCACGGAACCCTAGTTACCCTGACGAAGCAGTCGTGGAAATGCAGGCGGAGCAGGCCGGCCGGCACCGTGCGGTCTTTGGCCATGGCCT
GCTTCACCGCCGCCGCCACCGCCGCCTCCGCCTTGGGGCAGCTCTTGGCGTAGTAGTCCAGGCTCAGCGCCTCGCCGCCACCCACCAGCATCGTCATAGT
CATCACCACAACGATTAGCAGCTGTACCAGATCCAGATGGGACTGGGACGACGCCATTGCTGATGCCATTGCCTGCTGCTGCTCTGCATCGATCGATCCG
TCTTAGAGCTACCGTGCTGCTAATTAAGCTATGTATGTATGTATACCTCGTTCGTACCCACTCTGCTTTGGCTTTGGAGCTAGCTAGATTATTAGACAAG
AATAATACTATATGGTACTGGAAATAATAATTATTAATTGTACGTATGTAGTATGTATA