Detailed information on CNT30100341


BLAST search results

BLAST vs Swiss-Prot:
sp|O80939|LRK41_ARATH, E-value = 3e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552882Oryza rufipogonOryza glaberrima54.1210095.56473forward
CNT30108174Oryza rufipogonOryza longistaminata50.2349.2293.17439forward

Expression of CNT30100341

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MAADTRGGSDDAEHKGRRERPHCCLLLPAFW*

>peptide 2 (83 aa)
RRPPPPAGGRAASGGWLMRAPLGGQHMGVRAPQSVEAREGCDWVSQARGAVEASGGRWGRRLRALGVCVASSIRAGGRSLSRS*

>peptide 3 (86 aa)
MTRAMPWPPTPGEAVTMPNTKDAEKDRTAAFFSPPSGDDDSSKRSGVGWNAWPLTCGLPLVSSSRPSGVTMAVPSRVRSFTPAKPE*

>peptide 4 (93 aa)
PAAAAARRRPGGQRGVADEGSAGRPAYGGAGATVRRSAGRLRLGKPGAWSGGGKRRPVGEAAACARCLRRIEHSSWWKEPIEELSKRAVVLDY*

Sequence

>CNT30100341
CCGGCGGCCGCCGCCGCCCGCCGGCGGCCGGGCGGCCAGCGGGGGGTGGCTGATGAGGGCTCCGCTGGGCGGCCAGCATATGGGGGTGCGGGCGCCACAG
TCCGTAGAAGCGCGGGAAGGCTGCGACTGGGTAAGCCAGGCGCGTGGAGCGGTGGAGGCAAGCGGCGGCCGGTGGGGGAGGCGGCTGCGTGCGCTCGGTG
TCTGCGTCGCATCGAGCATTCGAGCTGGTGGAAGGAGCCTATCGAGGAGCTGAGCAAGCGAGCTGTGGTTCTCGATTACTGATTTCCTGGTGGCTGAAAA
TCAGCGACGGAAGGTATCTCAAAGAGATTTGAATAGCTATTTTAACCGTGGGTGATGTGCCACCAACCCCAACTACTTGTGGTAATGGAATTGTTGCGGT
GGAAGAGGCTGGTGAACAGGTAGAAGAGGTGGAAGTACAATTGGGTTCATTTCATATTGCTTGACGAGCTGAACAGGTATGTGCTGGCGAGCCCGGAGGA
GAGGTCCTTGGTTGGGGTGATGACGAGGGCGATGCCATGGCCGCCGACACCAGGGGAGGCAGTGACGATGCCGAACACAAAGGACGCCGAGAAAGACCGC
ACTGCTGCCTTCTTCTCCCCGCCTTCTGGTGACGACGACTCCTCGAAGCGCAGCGGCGTCGGATGGAATGCGTGGCCTTTAACCTGCGGCTTGCCATTGG
TCAGCTCGAGTAGGCCATCTGGTGTGACCATGGCCGTGCCGTCGAGGGTTAGGTCCTTCACTCCGGCAAAGCCGGAGTAGGCAAACTGGTCCCCGCCGTT
GCCGTCACCGGCAGCAGCAACGGCTGCTGCAAGATGAACGCCATAGAGGAGGCTACACTGTAGACACAATATGC