Detailed information on CNT30100318


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596393Oryza rufipogonOryza meridionalis60.2226.0897.32224forward
CNT30106216Oryza rufipogonOryza longistaminata57.2645.3296.71213forward
CNT30576798Oryza rufipogonOryza barthii60.2222.4496.88224forward

Expression of CNT30100318

Peptides detected in this lncRNA

>peptide 1 (83 aa)
PIPVFSLRPGPGINHLLPRRGKKPREEAAAQRRRGARRAARPEGDGDGDSTALSSGRHLLSVTEGYSSSFGAITDVGFYVIKM*

>peptide 2 (66 aa)
AHPGVFPAPRPGNKSSTPEAWKKTSRGGGGATKTRRAAGGATRRRRRRRQHGSLIRPPPSLRHRRL*

Sequence

>CNT30100318
GCCCATCCCGGTGTTTTCCCTGCGCCCCGGCCCGGGAATAAATCATCTACTCCCGAGGCGTGGAAAAAAACCTCGAGAGGAGGCGGCGGCGCAACGAAGA
CGCGGCGCGCGGCGGGCGGCGCGACCCGAAGGCGACGGCGACGGCGACAGCACGGCTCTCTCATCCGGCCGCCACCTTCTCTCCGTCACAGAAGGCTATA
GTTCGTCATTTGGAGCAATCACTGATGTTGGATTTTATGTAATTAAAATGTGATGGTAGCAGCTTCATGAAGTACTTAAACTCTCATTTTGGGAGATCCT
GGGAGAAGTTTGGGTTTTGTTGTGTATTTAGACTTAGCTAGTGCAGCCTGTTTTGAGTTTGCTATGTGAGAT