« Back to Oryza rufipogon search


Detailed information on CNT30100313


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENI3|RPOC1_ORYNI, E-value = 3e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30699079Oryza rufipogonQuercus lobata52.1934.4989.08119forward
CNT30632296Oryza rufipogonVigna unguiculata86.423.5484.26197forward
CNT30202316Oryza rufipogonPisum sativum59.2127.1690.37135forward
CNT30444512Oryza rufipogonSaccharum spontaneum48.2512.5384.55110forward
CNT30129950Oryza rufipogonCorymbia citriodora59.2127.2291.11135forward
CNT30154455Oryza rufipogonPrunus persica27.198.2795.1662forward
CNT3039151Oryza rufipogonCucumis melo94.325.1586.05215forward

Expression of CNT30100313

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MSHGTCEFDVSHLISSYPRINKFYSVFLAKSFVFVFSSARSRISTSTNSAFY

Sequence

>CNT30100313
CCTCCAATTTCTTAAGGGGTTTATCTAAAAGATTCGCGATATAACTAGGAAGACCTTTTAAATACCACACATGAGTCACGGCACATGCGAGTTTGATGTA
TCCCATTTGATATCTTCGTATCCGAGAATCAACAAATTCTACTCCGTATTTTTGGCAAAATCTTTCGTCTTCGTTTTCAGCTCCGCTCGCTCGAGAATTT
CCACAAGCACAAATTCTGCTTTTTATGG