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Detailed information on CNT30100297


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691003Oryza rufipogonOryza sativa38.2943.24100505forward
CNT30670726Oryza rufipogonSetaria viridis29.4270.6790.21388forward
CNT30512755Oryza rufipogonJuglans regia9.0233.6286.55119forward
CNT30561449Oryza rufipogonActinidia chinensis24.5648.1490.74324forward
CNT30237230Oryza rufipogonBrassica oleracea24.3438.2182.87321forward
CNT30312423Oryza rufipogonCamelina sativa13.9540.3579.89184forward
CNT3074285Oryza rufipogonBrassica juncea11.0726.3595.21146forward
CNT30262296Oryza rufipogonBrassica rapa13.0421.3487.79172forward
CNT30364686Oryza rufipogonSorghum bicolor19.2632.8288.58254forward
CNT30575416Oryza rufipogonOryza barthii57.6288.5898.95760forward

Expression of CNT30100297

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MEAGFASTMPLSISSFCIPRRSRMCSLVCGMGPSAPETTRMAPSICAAPVIMFLT*

>peptide 2 (29 aa)
ITWTHQFVNQQIINISSPKKKKIMKLIYM*

>peptide 3 (73 aa)
MLHPVYFKIVLMTPAPTVFPPSRMANLIPCSQATGWMSSTTILTRSPGMHIFASSSLSFIIFVTFPVTSVVRM*

>peptide 4 (65 aa)
MVMPRARSSGAASISSYFLGALPPTEASTMVSAAVSVVFPWSTWPMVPMLTRGLEEEVEKTRAVV*

Sequence

>CNT30100297
AATCACTTGGACGCACCAATTTGTTAACCAACAGATAATTAATATTAGTTCCCCAAAGAAAAAGAAGATAATGAAATTGATATATATGTAAGCATCAGAA
CTAGCATCAAGATAGGTTTGTCAAGCAAGCAAACCACATCACAGATGATGCTAGGCTGATAGCTTATATAATCTGAAGCAAGAAATGTACTACATCCGTA
CATGTGTAACTCTACAATTCCATGTGGCATCAAGCTCAATAGATGAACAATTGAACACATGACAGTAGATGGCACTGCATAGCCAAATTAGTTGCAAACA
GATGTATCTTTGTCGTGAATATCACAAAGTATGCAAATTCACTTGAAGAGAAAAGTGCCATACTACAATTTCACATGAGCAACCCCTAAAACTCAACGCG
TAATAACAACTACAGAGCATTTCGCAAAGAGTAAACAAGGAAAATTCTCACGGTGGATATGCTCCATCCAGTTTACTTCAAGATCGTATTGATGACGCCG
GCACCGACGGTCTTTCCACCCTCACGGATGGCAAACCTCATTCCCTGCTCACAAGCGACGGGCTGGATGAGCTCCACAACCATCTTGACACGGTCACCAG
GCATGCACATCTTCGCCTCCTCGTCCTTGTCATTCATAATCTTTGTGACATTCCCCGTCACATCGGTAGTCCGCATGTAGAACTGAGGGCGGTAACCAGG
GAAAAACGGTGAGTGCCGTCCACCCTCGTCCTTCTTCAGGACATACACAACCGCATCAAACTTGGTGTGTGGCGTGATGGAAGCAGGCTTCGCAAGCACC
ATGCCTCTCTCGATATCATCCTTCTGCATACCTCGGAGAAGCAGGATGTGCTCCTTGGTCTGCGGCATGGGCCCGTCGGCGCCGGAGACGACGAGGATGG
CGCCGTCCATCTGCGCGGCGCCGGTAATCATGTTCTTGACGTAGTCGGCGTGGCCGGGGCAGTCGACGTGGGCGTAGTGGCGGGTCTCGGTCTCGTACTC
GACGGTGGCGGTGTTGATGGTGATGCCGCGGGCGCGCTCCTCGGGCGCCGCGTCGATCTCGTCGTACTTCTTGGGGGCGCTCCCGCCCACGGAGGCGAGC
ACCATGGTGAGCGCCGCCGTCAGCGTAGTCTTCCCGTGGTCGACGTGGCCGATGGTGCCGATGTTGACGCGCGGCTTGGAGGAGGAGGTGGAGAAGACCA
GGGCCGTGGTGTAGGCCGCGGAGGAGGTAGGCGCAGGGGAGGGGGGGGGGGGGAGGGTTCGGATTTGGGGATGGATAGGGGAGAGCGGAGAGGGGTTTGC
GCTTGCTTATCTAGAAGAG