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Detailed information on CNT30100260


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 5e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675350Oryza rufipogonSetaria viridis25.7788.9489.73185forward
CNT30532226Oryza rufipogonEucalyptus grandis44.1543.8588.64317forward
CNT30547527Oryza rufipogonIpomoea triloba41.2368.3684.46296forward
CNT30512951Oryza rufipogonJuglans regia57.2452.6982.24411forward
CNT30372986Oryza rufipogonArabidopsis thaliana58.541.182.14420forward
CNT3019597Oryza rufipogonCitrullus lanatus39.6938.183.16285forward
CNT30728649Oryza rufipogonCorchorus capsularis31.8921.0383.84229forward
CNT30405825Oryza rufipogonBeta vulgaris20.3363.7685.62146forward
CNT3045373Oryza rufipogonPrunus dulcis58.553.5782.14420forward
CNT3085191Oryza rufipogonVigna radiata22.1422.1885.53159forward
CNT30612508Oryza rufipogonArabis alpina58.516.5582.14420forward
CNT3015270Oryza rufipogonZea mays27.1643.0592.31195forward
CNT30345702Oryza rufipogonEragrostis tef58.9152.3589.36423forward
CNT30153558Oryza rufipogonPrunus persica28.5560.6581.46205forward
CNT30332479Oryza rufipogonDioscorea rotundata17.4144.1788125forward
CNT30149525Oryza rufipogonBrachypodium distachyon15.8837.7586.84114forward
CNT3050899Oryza rufipogonCucumis sativus20.4758.3383.67147forward

Expression of CNT30100260

Peptides detected in this lncRNA

>peptide 1 (39 aa)
NKYHSTETQQECEHYNLDSKKMIQVPHPLHHDRVKIVSQ*

>peptide 2 (32 aa)
MSQWSNTHWGKAWPDVAALSWLENPKDSMTGR*

>peptide 3 (82 aa)
MSSLLVQNTIDTTKGILRGLDLHQVDGLKKPGLCCELRSIDDPPGRGNDLATTSVNSISMENNIAHLKADTTHVLLSQSTLL*

>peptide 4 (64 aa)
MKYDNESSSLSSRPTRTCKGNGTTHAAAKNLELVLEIGEGSHHVPMVEHTLGEGLARCRSPKLA*

Sequence

>CNT30100260
AATAAATACCACTCAACAGAAACGCAACAAGAATGTGAACACTATAACTTAGACAGCAAAAAGATGATCCAGGTTCCACATCCGTTACATCACGACAGAG
TAAAAATAGTTTCTCAGTAGCACGCGAACATAGGATTGTTGATGTGAAACACATGCATTCGACAAAAGGGAAATGAAATACGACAACGAAAGCAGTTCTC
TTAGCAGTAGACCAACTAGAACATGTAAGGGTAACGGCACAACACATGCGGCGGCCAAAAATTTAGAGCTTGTCCTCGAAATCGGAGAGGGGAGTCATCA
TGTCCCAATGGTCGAACACACACTGGGGGAAGGCCTGGCCAGATGTCGCAGCCCTAAGCTGGCTTGAGAACCCAAAGGACTCGATGACAGGGAGGTAAGC
CTTGATGTTGTACAGAGGGGTACCAGGCCTCTGCATCTCCTCGAACACATGTCCTCTCTTCTGGTTCAGAACACCATAGATACCACCAAGGGCATTCTCA
GGGGCCTGGATCTCCACCAGGTAGACGGGCTCAAGAAGCCTGGGCTTTGCTGTGAGCTGAGAAGCATAGATGACCCTCCTGGCCGTGGGAATGACCTGGC
CACCACCTCTGTGAATAGCATCAGCATGGAGAACAACATCGCACACCTCAAAGCAGATACCACGCATGTTCTCCTCAGCCAGAGCACCCTCCTTTGATGC
CCACTGGAAACCAGCCAC