Detailed information on CNT30100253


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 1e-146

BLAST vs NONCODE:
NONGMAT000778, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Oryza rufipogonSetaria viridis33.3957.4189.4368forward
CNT30640184Oryza rufipogonNymphaea colorata19.6928.6782.49217forward
CNT30532843Oryza rufipogonEucalyptus grandis20.1530.3390.09222forward
CNT30316236Oryza rufipogonCorylus avellana22.4153.8187.04247forward
CNT30547574Oryza rufipogonIpomoea triloba21.9668.1786.36242forward
CNT30512729Oryza rufipogonJuglans regia41.9244.984.63462forward
CNT30373394Oryza rufipogonArabidopsis thaliana22.7844.6684.86251forward
CNT30276060Oryza rufipogonChenopodium quinoa21.9638.1786.36242forward
CNT30379936Oryza rufipogonManihot esculenta22.8775.4585.71252forward
CNT30405823Oryza rufipogonBeta vulgaris21.5152.6785.65237forward
CNT30488117Oryza rufipogonOlea europaea22.2350.286.12245forward
CNT30711584Oryza rufipogonGlycine max54.0884.6682.38596forward
CNT30191304Oryza rufipogonSecale cereale54.1745.8991.29597forward
CNT30300473Oryza rufipogonTriticum aestivum34.2138.9589.39377forward
CNT30224354Oryza rufipogonHordeum vulgare36.377.0789.5400forward
CNT30395070Oryza rufipogonTriticum turgidum54.1778.0489.95597forward
CNT30561656Oryza rufipogonActinidia chinensis54.1742.6483.75597forward
CNT30510505Oryza rufipogonSolanum lycopersicum26.7727.1689.83295forward
CNT30552635Oryza rufipogonOryza glaberrima92.297.8899.71016forward
CNT30143941Oryza rufipogonMedicago truncatula21.9654.0283.47242forward
CNT30440797Oryza rufipogonAegilops tauschii56.986.1387.72627forward
CNT30313757Oryza rufipogonCamelina sativa23.6829.7684.29261forward
CNT3059659Oryza rufipogonArabidopsis lyrata19.8750.4682.19219forward
CNT30135610Oryza rufipogonLolium perenne38.7550.4789.23427forward
CNT3014085Oryza rufipogonZea mays50.6491.4888.17558forward
CNT30605685Oryza rufipogonGossypium raimondii30.9444.6387.39341forward
CNT30683923Oryza rufipogonTriticum urartu54.1765.2589.45597forward
CNT30722731Oryza rufipogonTriticum spelta20.4244.0384.89225forward
CNT30361520Oryza rufipogonSorghum bicolor23.0537.1388.19254forward
CNT30596064Oryza rufipogonOryza meridionalis46.4610099.22512forward
CNT30359537Oryza rufipogonLactuca sativa27.6846.2880.33305forward
CNT30369654Oryza rufipogonOryza glumipatula41.8352.3999.78461forward
CNT30107537Oryza rufipogonOryza longistaminata77.6893.1499.42856forward
CNT30575129Oryza rufipogonOryza barthii73.8710099.88814forward
CNT30497701Oryza rufipogonDigitaria exilis29.0498.4691.56320forward
CNT30116094Oryza rufipogonOryza nivara79.85100100880forward
CNT30604019Oryza rufipogonOryza punctata29.8597.3490.88329forward

Expression of CNT30100253

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MLGPVVSGPKHQIFFARSLSQPNSSDRILERTLGSSRGPIRPSSMASANPSSKGRASM*

>peptide 2 (32 aa)
MSQWSNTHWGKAWPDVAALSWLENPKDSMTGR*

>peptide 3 (39 aa)
NKYHSTETQQECEHYNLDSKKMIQVPHPLHHDRVKIVSQ*

>peptide 4 (57 aa)
MKYDNESSSLSSRPTRTCKGNGTTHAAAKNLELVLEIGEGSHLLLETLPLADILHQG*

Sequence

>CNT30100253
AATAAATACCACTCAACAGAAACGCAACAAGAATGTGAACACTATAACTTAGACAGCAAAAAGATGATCCAGGTTCCACATCCGTTACATCACGACAGAG
TAAAAATAGTTTCTCAGTAGCACGCGAACATAGGATTGTTGATGTGAAACACATGCATTCGACAAAAGGGAAATGAAATACGACAACGAAAGCAGTTCTC
TTAGCAGTAGACCAACTAGAACATGTAAGGGTAACGGCACAACACATGCGGCGGCCAAAAATTTAGAGCTTGTCCTCGAAATCGGAGAGGGGAGTCATCT
GCTCCTTGAGACCCTTCCTCTTGCGGATATCCTGCACCAGGGTTGAAGCCTGCGAGCCAGCTTCAAGAGGATCAGAGGTCATCATGTCCCAATGGTCGAA
CACACACTGGGGGAAGGCCTGGCCAGATGTCGCAGCCCTAAGCTGGCTTGAGAACCCAAAGGACTCGATGACAGGGAGGTAAGCCTTGATGTTGTACAGA
GGGGTACCAGGTAGACGGGCTCAAGAAGCCTGGGCTTTGCTGTGAGCTGAGAAGCATAGATGACCCTCCTGGCCGTGGGAATGACCTGGCCACCACCTCT
GTGAATAGCATCAGCATGGAGAACAACATCGCACACCTCAAAGCAGATACCACGCATGTTCTCCTCAGCCAGAGCACCCTCCTTTGATGCCCACTGGAAA
CCAGCCACAACGGAATCCTTGATTTCATTCAGATACTGAACTCCCTTACACATATCAACCACCATGTTGGGGCCAGTTGTCTCAGGTCCAAAACACCAAA
TCTTCTTTGCAAGATCCTTGTCCCAGCCGAACTCCTCAGACAGGATCTTGGAGCGCACCTTGGGATCATCACGTGGGCCAATACGACCGTCATCAATGGC
CTCAGCCAATCCCTCCTCCAAGGGGCGAGCTTCCATGTAGAGACGGTTGTGCTTGTTCGGGGACTTGCTCATAACAGTACGGCACGACTTCTCAAGGACA
GTCTCACGGAAAGAAACAACAGGTGGGGAAACAATGATTTCAGCACCACCCATGAAATCTTCCTGCAGATCCTTCAAGCAAATTTCAAGGTGAAGCTCTC
CA