« Back to Oryza rufipogon search


Detailed information on CNT30100248


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6XAT2|ERL2_ARATH, E-value = 3e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690966Oryza rufipogonOryza sativa29.2750.3988.8259forward
CNT30369729Oryza rufipogonOryza glumipatula20.6836.7595.63183forward
CNT30149732Oryza rufipogonBrachypodium distachyon32.0959.7985.21284forward

Expression of CNT30100248

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MPASITAALVSMPSSCGRQPESWLFRSSNSRRESFACAIDGGIDPVSLLLATAR*

>peptide 2 (45 aa)
MSIALPVMALAIPTLFCEPLLETIRFILIPPMFIIAVTIGYLASS*

>peptide 3 (75 aa)
MQASLVKCSVRHVAGVVLCHPVRRRRRGVGSSGGAPHVGGARRGASLRLAEERRALRWPPLAVAAQVELLDAGEA*

Sequence

>CNT30100248
GTCAAAAATTTGTGTGTAGTAAAGTTCGATGTGACAGAAAAATTGAAAGTTTGAAGAAAAAAGTTAGAATCTAGATAGGGCCATAGTACAGGTACACAAG
AGTACAAGAGGTGAGATCTAGACGTGACAGCCATAGCTAGCCACACGTGCACAGAAAACAAAACACATCACGAGCACACCAACAGAACACAAGAATGCTA
AGGCAAATGCCACTGAGACGCTAGCTTCTAGCTGTCCCCTACTGCATGCATGCATGCAAGCCTCACTTGTGAAGTGTAGCGTACGTCACGTAGCTGGAGT
AGTCCTTTGCCACCCTGTCCGCCGCCGCCGCCGCGGCGTTGGCAGCTCCGGCGGGGCACCCCACGTGGGTGGCGCTCGCCGCGGGGCAAGTCTTCGGCTG
GCTGAGGAACGACGCGCACTCCGCTGGCCGCCGCTGGCGGTTGCCGCCCAGGTTGAGCTGCTCGACGCTGGTGAGGCATGAGAAGGATGATGGGATCGGG
CCGGTGAGCTGGTTCATGCCGGCGTCGATCACGGCCGCCTTGGTGAGCATGCCGAGCTCGTGCGGGAGACAGCCGGAGAGCTGGTTGTTCAGGAGTAGCA
ACTCGAGGAGGGAGTCTTTTGCCTGTGCGATTGACGGTGGGATCGATCCGGTGAGCCTGTTGTTGGCAACGGCAAGGTAGCTCAACGTGGAGAAGCTTAG
GTTGGCAGGAAGTAGCCCGATCATTTTGTTGTCGTTTATGAGCATCGCCTTACCTGTCATGGCATTGGCCATTCCAACCCTCTTCTGTGAGCCACTCCTG
GAGACCATTAGATTTATTTTGATCCCTCCAATGTTTATCATCGCGGTAACGATCGGATATTTGGCCTCGTCGTAAGAAAAGTGAG