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Detailed information on CNT30100228


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691502Oryza rufipogonOryza sativa56.7183.2100317forward
CNT30671312Oryza rufipogonSetaria viridis16.6428.3595.793forward
CNT30552636Oryza rufipogonOryza glaberrima80.1481.01100448forward

Expression of CNT30100228

Peptides detected in this lncRNA

>peptide 1 (32 aa)
TRNQAAITKKKDQTIQYLNYSPDFLLFRLLGS*

>peptide 2 (54 aa)
MGRSRRTPAAAPPSAPPPSLSPLSFSLLAAVCGSVEGCWVVGLVASGEVKRWRKR

>peptide 3 (51 aa)
KKSSGNHKKERPDNPILKLLPRFLIVQIIGQLIKQPESKAASTDTLTHREK*

Sequence

>CNT30100228
ACAAGAAATCAAGCGGCAATCACAAAAAAGAAAGACCAGACAATCCAATACTTAAATTACTCCCCAGATTTCTTATTGTTCAGATTATTGGGCAGCTAAT
CAAGCAACCAGAGAGCAAAGCTGCAAGCACAGACACACTGACACACAGGGAGAAGTAATAATAAGTTACACATGGAATTACGGATGGAATTAAGCTGTAG
AGCACAAGAGGATACAATAATCTAAGGGTTGATTTGGGGGGATTTTTTTTTTTCATTCGGTGAGGCGGGCGACGACGGGGTACTTGGCCTGGAACTTGGT
CTCCCAGTCGGCGAGGACGCCGAGCTCCTTGTCGGAGAGGCCGGAGAGGTGACGTCGTAGACCTTGCCGCGGACGGAGACGTAGATCGGCTTCGATGGGT
CGCTCCCGTCGTACGCCCGCAGCTGCGCCGCCGTCAGCTCCGCCGCCATCTCTCTCTCCTCTCTCTTTCTCTCTCCTCGCGGCTGTGTGTGGATCAGTGG
AAGGTTGTTGGGTTGTGGGCCTTGTGGCTAGTGGGGAAGTGAAGCGGTGGAGAAAAAGG