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Detailed information on CNT30100218

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30552743	Oryza rufipogon	Oryza glaberrima	101.65	15.59	98.37	553	forward
CNT30575292	Oryza rufipogon	Oryza barthii	75	78.16	100	408	forward

Expression of CNT30100218

Peptides detected in this lncRNA

>peptide 1 (40 aa)
VTNILFNCCIIVCFYFLYTSNSAILECWFRYSWCSVPHLF*

>peptide 2 (37 aa)
MILVQCYLFLLVQAPLLAHHQLAHLLVNWLLELSPQQ*

>peptide 3 (42 aa)
MFFWKMVSDSVASVSLISWTDSISKICGSLSVRLSSVACSSH*

Sequence

>CNT30100218
TGGTAACCAACATTTTGTTCAATTGTTGCATTATTGTGTGTTTCTATTTCCTCTACACTAGCAACTCTGCTATCTTGGAGTGTTGGTTCAGGTACAGTTG
GTGCAGTGTCCCTCATCTCTTCTGATGATTCTGGTTCAGTGTTACTTATTTCTTCTGGTTCAAGCTCCTTTACTTGCACATCATCAGTTGGCTCACTTGC
TAGTAAATTGGCTTCTTGAGCTGTCTCCTCAACAATAGCCCCACTGCTTTGATCAGGTTCTTTTGCTGTAGCATTTTCTTCTGGGACAGACTCCTCGGAA
GTAGGAACAATGTTTTTCTGGAAAATGGTTTCAGATTCAGTAGCTTCAGTGTCTTTAATATCCTGGACTGATTCCATTTCCAAAATTTGTGGTTCACTTT
CTGTTAGACTTTCCTCTGTTGCTTGCTCCTCACATTGAGTAATATTACTTTGGTGGGCAATTGCTTGATCTTCAGAGGCTTCAACACTGCTCTCTACCTC
ACCTGTCCAATTATCTTCAACAGCAGCATGTGTTTGATGGGAAG