Detailed information on CNT30100164


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691571Oryza rufipogonOryza sativa10026.9699.26675forward
CNT30552615Oryza rufipogonOryza glaberrima10027.6198.96675forward
CNT30595788Oryza rufipogonOryza meridionalis57.4832.0492.01388forward
CNT30369709Oryza rufipogonOryza glumipatula10027.0499.11675forward
CNT30575434Oryza rufipogonOryza barthii10021.8898.96675forward
CNT30603626Oryza rufipogonOryza punctata54.6714.6789.7369forward

Expression of CNT30100164

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MDVRYSDRFSMCWVLFSEFVVVIRCSEITALYLGPMQSAKSLSCQKDVHGFSIICKLEDGLP*

>peptide 2 (40 aa)
LTVNITWFAMYPCCFGFVALQPFCLQNWHLLFRKPFSNSF*

>peptide 3 (47 aa)
MLFSSNLYSIILHYHQMLLLPIQYSASSCIVHCFILFKVCLFLLMLRL

>peptide 4 (33 aa)
MQRNYCAVSWTNAISEVLIVPKGCAWIFHHLQT*

Sequence

>CNT30100164
TTTTAACTGTTAATATCACTTGGTTTGCTATGTATCCTTGTTGTTTTGGCTTTGTTGCTTTACAGCCATTCTGCTTACAAAATTGGCATCTGTTATTTAG
AAAACCATTTTCTAACAGTTTTTAGATTTCCTTTCGAGTCTCCAACTGTTTTTAACCTCCAAGTTGCCACATAATGCATAAATATACCGAGTAAGTTTGC
CCCCCTCTGAAATATGGATGTTAGATACTCAGACAGGTTCAGTATGTGTTGGGTGTTGTTTTCTGAGTTTGTGGTTGTCATAAGATGCAGCGAAATTACT
GCGCTGTATCTTGGACCAATGCAATCAGCGAAGTCCTTATCGTGCCAAAAGGATGTGCATGGATTTTCCATCATTTGCAAACTTGAGGATGGCCTGCCCT
GATGCCCTCAGATGCTGATGGAAGTGTGTGGTTCATGAAAACGTGAGAAGCTAAGTAGTGGAGTAACGGGAGTGAGTACCAGTGTGGCCACTATGAAGAA
AGTTAATTACTGAGAAATTAAGACTTGAGCATGTTATTTTCAAGCAACTTGTACAGCATTATATTGCACTACCATCAAATGCTTCTCCTGCCTATACAAT
ACTCTGCAAGCTCTTGTATTGTACACTGTTTTATCTTGTTTAAAGTATGCTTGTTTTTGCTTATGTTGAGATTAC