Detailed information on CNT30100161


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552732Oryza rufipogonOryza glaberrima77.2690.6297.7435forward
CNT30595781Oryza rufipogonOryza meridionalis65.3676.0397.83368forward
CNT30115946Oryza rufipogonOryza nivara70.6969.58100398forward
CNT30550530Oryza rufipogonOryza brachyantha28.0621.8896.84158forward

Expression of CNT30100161

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSTAVGGGAGLAVSACGGSGASMAGAGWYSTC

>peptide 2 (84 aa)
MHVRVRACVRTCCLISEDQKSKIILRNFSMCSACSEMATDRLPSPLALGSTKASPSYAMPPGPMNTGRPQPKSASWIGSRSGTA*

Sequence

>CNT30100161
GATTAACCTTATTAACCCTCTGTGTTTCGTAATGTTTACGGATTAATTAACTGTTCACAATACAAATACAGTTGGCACAAAATGTGTCCTGCCCAAAAGC
GGGAAGGCAGGAAGGGAAAAATTTGCAGGAACTAACGTGTGGAATCAAAGAATCGTTGCTGCATCCTACCGATGATAGGCTGTGTTAAGAACCACCCCGC
CTCCTCTCCATGCATGTGCGCGTTCGTGCGTGCGTACGTACGTGTTGTTTGATTTCAGAGGATCAGAAGTCGAAGATCATCTTGCGGAACTTCTCCATGT
GCTCGGCCTGCAGCGAGATGGCCACCGACAGGCTGCCGTCGCCGCTGGCGCTGGGGAGCACGAAGGCGAGCCCCTCGTACGCGATGCCGCCGGGGCCCAT
GAACACCGGCCGCCCCCAGCCGAAGTCGGCGTCGTGGATCGGCAGTCGGAGCGGGACAGCTTGAAGATGTCCACGGCGGTGGGCGGCGGCGCCGGCTTGG
CGGTCAGCGCCTGCGGCGGCTCGGGGGCCAGCATGGCGGGCGCCGGCTGGTACTCGACGTGCG