Detailed information on CNT30100142


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002950, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691013Oryza rufipogonOryza sativa82.2166.8298.63439forward
CNT30596061Oryza rufipogonOryza meridionalis35.024.7892.51187forward
CNT30117344Oryza rufipogonOryza nivara29.0339.8587.1155reverse complement

Expression of CNT30100142

Peptides detected in this lncRNA

>peptide 1 (44 aa)
GVAGGGVTGAGGGVATEERQPAASGRAGLGLYSEPPPPDPERGR*

>peptide 2 (61 aa)
RGCGRRSDGRGRRCRDRGTAAGGERAGGPRPLLRASAARSRARAMRFGVRRENRHIWPNSP*

>peptide 3 (71 aa)
MRYISDGVPDERSAGDALNVGISNDSCEVLVMIHVNTNEYTMIHVRTTDDTREVPVMININLSTMISVRYQ*

Sequence

>CNT30100142
GCGGGGTTGCGGGCGGAGGAGTGACGGGCGCGGGCGGCGGTGTCGCGACAGAGGAACGGCAGCCGGCGGCGAGCGGGCGGGCGGGCCTCGGCCTCTACTC
CGAGCCTCCGCCGCCAGATCCAGAGCGCGGGCGATGAGGTTTGGCGTGAGGAGAGAGAATCGCCATATTTGGCCGAACTCTCCCTGATTTGGTGCATCCT
CTATTTTTGGAGGCCTTGATACCGTAATCTGCTGGAGCGCCGTTTTCTCCTCTCATGCGCTATATTTCGGATGGAGTACCGGATGAAAGATCTGCTGGGG
ACGCTCTAAATGTAGGAATCAGTAATGATTCTTGCGAAGTACTGGTAATGATACATGTAAACACCAATGAATATACGATGATACATGTACGTACTACTGA
TGATACACGTGAGGTACCGGTGATGATAAATATCAATTTATCAACAATGATATCTGTTAGATACCAATGATGATATGTGTAGATTTTGAATGATAGTACT
TCTTATCAATTATGATCCACCATGTCTACTACGC