Detailed information on CNT30100129


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCSAT000472, E-value = 2e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Oryza rufipogonOryza sativa51.5238.4598.71541forward
CNT30673559Oryza rufipogonSetaria viridis19.8173.2494.71208forward
CNT30730376Oryza rufipogonCorchorus capsularis20.3853.6389.25214forward
CNT30492211Oryza rufipogonOlea europaea12.126.1984.25127reverse complement
CNT30300556Oryza rufipogonTriticum aestivum50.4831.0195.66530forward
CNT30220912Oryza rufipogonHordeum vulgare11.6223.2898.36122forward
CNT30542882Oryza rufipogonBrassica napus40.8623.7788.81429forward
CNT30236148Oryza rufipogonBrassica oleracea40.5727.7388.73426forward
CNT30556052Oryza rufipogonOryza glaberrima9.7140.96100102forward
CNT30441515Oryza rufipogonAegilops tauschii39.3364.2396.13413forward
CNT30628236Oryza rufipogonDaucus carota21.2420.5289.24223forward
CNT30361727Oryza rufipogonSorghum bicolor27.3394.4195.47287forward
CNT30369712Oryza rufipogonOryza glumipatula21.995.04100230forward
CNT30425595Oryza rufipogonPapaver somniferum40.6772.9989.7427forward
CNT30646125Oryza rufipogonCannabis sativa9.7123.1383.33102reverse complement
CNT30109402Oryza rufipogonOryza longistaminata51.434199.44540forward
CNT30148380Oryza rufipogonBrachypodium distachyon37.6229.1397.22395forward
CNT30116897Oryza rufipogonOryza nivara2861.2597.96294forward
CNT30557406Oryza rufipogonPanicum hallii37.8194.0895.97397forward

Expression of CNT30100129

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MAEWLIAPVLKTGIVLGTIEGSNPSLSFCFPLSFLLRIEYVCFFICFFCSVPLSFFHRKE*

>peptide 2 (29 aa)
MGHIFCRTSFLPRLYVFFQPTQVQTVGAP*

>peptide 3 (52 aa)
MSFFNLLKSKPLGPLRGSNHGARRSQKRIVSPPKITSPVGERIRYLPKPVGPW

>peptide 4 (40 aa)
MVTWRIRNMTIAFQLAVFALIVTSSVLVISVPLVFASPDG*

Sequence

>CNT30100129
GCTTGTGAAATAAAGCATAAAACCCCCTCAACCCCATATCCAAATAAAAAAAGTGGTGAGTAATAAGTTTTAAAGAGAAGAATCAATGGATTCATGATTA
AACCCCTCCTACTTCTTGTATTTTATTACAATTTTGATTAAGTGAGGGATCAAATATAATATGTAGTCAACTTTATTTGATGGTAACTTGGAGGATTAGA
AATATGACTATTGCTTTCCAATTAGCTGTTTTTGCATTAATTGTGACTTCCTCAGTCTTAGTCATTAGTGTACCCCTTGTATTTGCTTCTCCTGATGGTT
AGTGAGTCATTTCGTATGGCTATGTTCTATTTGTAGGAATAAAATAAGGATTAGGCTGTGGAGAGATGGCTGAGTGGTTGATAGCTCCGGTCTTGAAAAC
CGGTATAGTTCTAGGAACTATCGAGGGTTCGAATCCCTCTCTCTCCTTTTGCTTTCCTCTCTCTTTTCTTTTGCGTATTGAATACGTTTGTTTCTTTATT
TGTTTTTTTTGTTCTGTCCCCTTATCTTTCTTTCATAGAAAGGAATGAATGGCTCGGCTAGATAGAATAACCGAGCCAGAACAGAAAAAAACTGTACAAC
AGGTATAAATAACAAAATCTTAGTTAAGAGGGGTCATGTAAAGAACAGGCTCCAAATCACGATCGATTCCCTTTTCAAATCCTGCTGCAGCAGCCCGGGC
TCTTCCTGCATGCCACAAATGGCCCACAAAAAAGAAGAATCCTAGAACAAAATGGGAAGTCGCTAACCAACTTCTAGGAGAAACATAATTAACTGCATTG
ATCTCGGTAGCTACGCCACCCACAGAATTTAAAGAGCCTAAAGGAGCATGGGTCATATATTCTGCCGAACGTCGTTCTTGCCAAGGTTGTATGTCTTTTT
TCAACCTACTCAAGTCCAAACCGTTGGGGCCCCTTAGAGGTTCTAACCATGGAGCACGAAGGTCCCAAAAACGCATAGTTTCCCCTCCAAAAATAACCTC
TCCCGTTGGGGAACGCATTAGATATTTACCTAAACCTGTGGGTCCTTGGG