Detailed information on CNT30100122


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SK39|SBP3_ARATH, E-value = 2e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519660Oryza rufipogonSetaria italica45.3638.7194.98259forward
CNT30442397Oryza rufipogonAegilops tauschii27.6715.9496.2158forward
CNT30686589Oryza rufipogonTriticum urartu27.6716.1295.57158forward
CNT30364531Oryza rufipogonSorghum bicolor29.9553.4495.32171forward
CNT30595654Oryza rufipogonOryza meridionalis85.1183.0897.12486forward
CNT30369561Oryza rufipogonOryza glumipatula89.3283.3399.8510forward

Expression of CNT30100122

Peptides detected in this lncRNA

>peptide 1 (50 aa)
KSSGNHKKERPDNPILKLLPRFLIVQIIGQLIKQPESKAASTDTLTHREK*

>peptide 2 (30 aa)
NQAAITKKKDQTIQYLNYSPDFLLFRLLGS*

>peptide 3 (37 aa)
MGRSRRTPAAAPPSAPPPSLSPLSFSLLAAVCGSVEGC

Sequence

>CNT30100122
AAATCAAGCGGCAATCACAAAAAAGAAAGACCAGACAATCCAATACTTAAATTACTCCCCAGATTTCTTATTGTTCAGATTATTGGGCAGCTAATCAAGC
AACCAGAGAGCAAAGCTGCAAGCACAGACACACTGACACACAGGGAGAAGTAATAATAAGTTACACATGGAATTACGGATGGAATTAAGCTGTAGAGCAC
AAGAGGATACAATAATCTAAGGGTTGATTTGGGGGGATTTTTTTTTTTCATTCGGTGAGGCGGGCGACGACGGGGTACTTGGCCTGGAACTTGGTCTCCC
AGTCGGCGAGGACGCCGAGCTCCTTGTCGGAGAGGCCGGAGAGGTCGCCGGAGACGTCGGCGTCGTCCTTGGACATCTTGCCGAGCGCGCGGCTGGCCTC
GCGGCCGGCGAAGACGGCGTAGACCTTGCCGCGGACGGAGACGTAGATCGGCTTCGATGGGTCGCTCCCGTCGTACGCCCGCAGCTGCGCCGCCGTCAGC
TCCGCCGCCATCTCTCTCTCCTCTCTCTTTCTCTCTCCTCGCGGCTGTGTGTGGATCAGTGGAAGGTTGTT