Detailed information on CNT30100106


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691344Oryza rufipogonOryza sativa10032.83100241forward

Expression of CNT30100106

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MVLRSHRRPFQVQSVKIFLVLYRTFCCNILACCTKIIYRHSSTNLVHVLHQCDITPREGF*

>peptide 2 (63 aa)
EELGLEEPRCHYGLAISQKTISSSVCQDFSCSLSHFLLQYPCLLHQDYLSSLLHKFGSRSSSM*

>peptide 3 (56 aa)
MSLWSCDLTEDHFKFSLSRFFLFFIALSAAISLLVAPRLFIVTPPQIWFTFFINVT*

Sequence

>CNT30100106
GGAGGAATTAGGACTTGAAGAACCTCGATGTCATTATGGTCTTGCGATCTCACAGAAGACCATTTCAAGTTCAGTCTGTCAAGATTTTTCTTGTTCTTTA
TCGCACTTTCTGCTGCAATATCCTTGCTTGTTGCACCAAGATTATTTATCGTCACTCCTCCACAAATTTGGTTCACGTTCTTCATCAATGTGACATAACT
CCGAGGGAAGGCTTTTGAAAGGACAAGCTCCGGAGATTTCC