Detailed information on CNT30100102


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30460329Oryza rufipogonSaccharum spontaneum24.1621.0189.8779forward
CNT30142664Oryza rufipogonLolium perenne29.3631.0794.7996forward
CNT308524Oryza rufipogonZea mays48.3220.7682.28158forward
CNT30115941Oryza rufipogonOryza nivara54.7433.3399.44179forward

Expression of CNT30100102

Peptides detected in this lncRNA

>peptide 1 (71 aa)
RRSRGGRRGRRWRPSRGSRGARRGRRRGGRGGGRRPRRRRRRRPRRARRGKMGQTKSVWMKTLTALLWYAP*

>peptide 2 (59 aa)
GEAEAGGEGGAGGPAEEAEERGEGAGAAVEEEVEGPVDGGAGGRGVRGGGRWARRRACG*

>peptide 3 (32 aa)
EKPRRAARAALAAQQRKQRSAARAPARRSRRR*

Sequence

>CNT30100102
CGGAGAAGCCGAGGCGGGCGGCGAGGGCGGCGCTGGCGGCCCAGCAGAGGAAGCAGAGGAGCGCGGCGAGGGCGCCGGCGCGGCGGTCGAGGAGGAGGTA
GAAGGCCCCGTAGACGGCGGCGCCGGCGGCCGCGGCGTGCGCGGAGGGGGAAGATGGGCCAGACGAAGAGCGTGTGGATGAAGACGTTGACGGCGTTGCT
GTGGTACGCGCCGTAGAAGGCGAAGTGGTGCTCCAGGTCGAGGAGGCCGCCGCCGCCGCCGCCGCCGCTAGGCTTCGCCATGGCTGCGTGTGTTCGGGGG
GTTCCTTCCAGGTGAGGACGACAAGAG