Detailed information on CNT30100090


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552747Oryza rufipogonOryza glaberrima28.416.8795.65322forward
CNT30575420Oryza rufipogonOryza barthii28.415.9795.34322forward

Expression of CNT30100090

Peptides detected in this lncRNA

>peptide 1 (32 aa)
VYSEVHAVLCIFMPSYSDCLMALKQQTGGLIR*

>peptide 2 (35 aa)
MPSVWDKAGNVVTPPNCKVTAFHQDLEGNGALDML*

>peptide 3 (35 aa)
MVVQLFGDIKEEITIWREAGFMQVTLFENQRDEIT*

>peptide 4 (35 aa)
MASRRSFRDYLRKVFGTLFFFRDCLSKLYGCAALW*

>peptide 5 (83 aa)
MASGSFSAKSAYMMQFEGTKAKPFKRIVWEPWAPPKCKFFAWLILQNKVWRADRLQRRGMANQPLCPLCGTRLETSLHLLIAK*

Sequence

>CNT30100090
GTATACTCCGAAGTACATGCCGTTTTATGTATTTTTATGCCTTCATATTCTGATTGTCTAATGGCTCTAAAACAACAGACGGGTGGCCTCATCAGGTGAA
TTGCTCCCTATGCAACCTGACATTTCAAGATGACACCCAACCTTTTTGTTCAATGTGCTTTCACAAACAGGATTTGGAGATTGCTCAGGAGCTAGGTGAA
TGTTGGCTTTCCGCTTCCCAGTGACCTCAATGTAGACTTGGCTGATTGGCAGATGGCTTCAAGGAGAAGCTTCAGAGATTATCTCAGAAAAGTTTTCGGT
ACACTCTTCTTCTTCAGAGATTGTCTCAGCAAGTTGTATGGTTGTGCAGCTCTTTGGTGACATCAAAGAAGAAATCACAATCTGGAGGGAGGCAGGCTTC
ATGCAAGTCACTTTATTCGAAAATCAACGGGATGAAATAACTTGACTCTCATGGCATCGGGAAGCTTCTCAGCTAAGTCGGCGTACATGATGCAATTTGA
GGGCACAAAGGCGAAGCCTTTCAAGCGCATTGTTTGGGAACCTTGGGCACCGCCCAAATGTAAGTTCTTTGCATGGCTAATACTGCAAAACAAAGTATGG
AGAGCAGATAGACTTCAAAGGCGTGGCATGGCAAACCAGCCGCTATGCCCTCTGTGTGGGACAAGGCTGGAAACGTCGTTACACCTCCTAATTGCAAAGT
GACGGCTTTCCATCAGGATTTGGAAGGAAATGGAGCGCTAGACATGCTATGACACAGCGGTGCAGTGGTGGGAGGGATTCGTTTCAATTCCTGGAATACC
GAAGAAGCCCCTAAAAACGTTGATCATCATGGTTTCATGGATACTATAGATCGAACGAAAGAAACGCAAGGATCTTCCGGAATACGACGCAAACGCCCAC
AGCTCTGATCCAGGCCATTAAAGATGGAGCTGCGTATAGGGCAGGCGCTCGATGCCTGACTGAGTTTGTACCGTCGGGAGAGTAAGCCTTCTCCCTTTCC
TTTTTGCCGGCTGTCACTTTCTTTAAGCAACCCTTGTACATAAACTGAGGCCATGCCCTCCTCTATTAATACATAAGGCAAAGTCTCTTGCCTTTCCTTC
AGAAGAAAAAGAAAAATCTGGTTGACAAATCAAA