Detailed information on CNT30100089


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691005Oryza rufipogonOryza sativa10093.39100537forward
CNT30107197Oryza rufipogonOryza longistaminata13.4123.7694.4472forward

Expression of CNT30100089

Peptides detected in this lncRNA

>peptide 1 (69 aa)
LVSTATAPPLLGRRRTRRLFSARRRRVGTRGNASASPSLPESTSDDRRACLPPKRRNASICFMKQPELN*

>peptide 2 (45 aa)
SSLHGDGAAASRSPAHPPPLFGSPAARRDSRKCFCVAITTRINFR*

>peptide 3 (29 aa)
MTTQMQHESGVHILTWNIWTGYQDLKLPS*

>peptide 4 (38 aa)
MIQSILTVRKSPFLASCFSQLIFECPNMHCFTTIYVEQ*

>peptide 5 (31 aa)
MLLRRHHYPNQLQMIDVLACHQKGEMQAYVS*

Sequence

>CNT30100089
GTCTAGTCTCCACGGCGACGGCGCCGCCGCTTCTCGGTCGCCGGCGCACCCGCCGCCTCTTTTCGGCTCGCCGGCGGCGCGTAGGGACTCGAGGAAATGC
TTCTGCGTCGCCATCACTACCCGAATCAACTTCAGATGATAGACGTGCTTGCTTGCCACCAAAAAGGAGAAATGCAAGCATATGTTTCATGAAACAGCCT
GAGCTCAATTGACCAAAGGCTGAAGCAACATGCTAGGGGAAAAAAACAGTTGTTATGTTTTTTATCCATTCAGTTAAAACTTATAAGTAGTAAGCACAAG
AGAGGCAGCAAGGCCAGCAAAATTCAGATGACTACTCAGATGCAGCATGAAAGTGGAGTACATATCCTGACCTGGAACATATGGACAGGATATCAGGATC
TTAAACTGCCTTCATGATCCAGTCCATTTTGACTGTGCGCAAGAGCCCTTTCTTGGCTAGCTGCTTCTCCCAATTGATTTTTGAGTGTCCCAACATGCAC
TGTTTTACAACGATCTACGTTGAGCAATGAATGTTTT