Detailed information on CNT30100086


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30254425Oryza rufipogonAvena sativa26.3713.7288.05159forward
CNT30459552Oryza rufipogonSaccharum spontaneum25.5410.4389.61154forward
CNT309847Oryza rufipogonZea mays25.5411.3488.31154forward
CNT30585682Oryza rufipogonEchinochloa crusgalli24.5412.7489.19148forward
CNT30495950Oryza rufipogonDigitaria exilis26.212.4290.51158forward
CNT30556241Oryza rufipogonPanicum hallii25.548.6490.91154forward

Expression of CNT30100086

Peptides detected in this lncRNA

>peptide 1 (33 aa)
DPAHAPPPFEPPSPAPPRATARRSRTDLVNSPP*

>peptide 2 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGMVTSLWQQLHILQENL*

Sequence

>CNT30100086
AGATCCGGCGCACGCTCCTCCCCCTTTTGAGCCGCCATCGCCGGCACCGCCGCGCGCGACGGCGCGGCGCAGCCGCACCGATCTCGTGAATTCCCCTCCC
TGACCACTCTCCCGGCCCCGGCCCCAGCCACCACCTAAATCGCAATGCCTTTCTCCGCTAGCTCCCGCCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCG
CGCGCGTGGTTTCTCAGATTCATGCAAGGGGATGGTGACAAGCTTGTGGCAGCAACTGCACATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACC
GATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATCAAGTTTGCATGAATTTCTCTAGGAATGCCCAGTG
AGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGTAGCGGAACGTTCATTGTCCCATGCTA
CTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAAGCAAATGAAAAATTC
CAG