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Detailed information on CNT30100083


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3B724|CALS5_ARATH, E-value = 2e-42

BLAST vs NONCODE:
NONORUT002655, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690779Oryza rufipogonOryza sativa21.5347.0299.49197reverse complement
CNT30552006Oryza rufipogonOryza glaberrima29.5115.3499.26270forward

Expression of CNT30100083

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MIMKSPRALLKPLSSPIPINIGKAIKRPSCTID*

>peptide 2 (38 aa)
MTTICTTLRQEHDKICMTANCTVTNIMHATALYTLPLS*

>peptide 3 (81 aa)
MKRASAHFLLTNSPILRFVNKDNRSRSQSLKTLLPEGTLSVASFPCLLNSFQEIGLPLQTHLLVNSLCKITRKFIVPELITD

Sequence

>CNT30100083
CTTGGTCCCAAGGTAGAAAGTGAAGAACACTGAACAGAGCTGAAGCTGCATGATTATGAAATCCCCCAGGGCGCTTCTGAAACCTCTTTCTAGTCCAATC
CCCATAAACATTGGCAAGGCCATCAAAAGACCTAGCTGCACAATAGACTGAGATCCCATAGCCGCTTGAAGTGCACGATTCCCTCTCATCCGTGCTTGCT
TCATAATTGCAAACTCAAGTCCACTTAATGCTAAGTAAAGTCTTCCGTACAAGAAAACATACACTATTATGACAACCATCTGCACAACATTAAGACAAGA
ACATGATAAAATATGCATGACGGCCAACTGTACAGTAACAAATATAATGCATGCTACTGCCCTATATACGTTACCATTGAGCTAATATAAAACCCAACAG
TTGTAAAATAGCACGAAAGCATTCGGAAGAAGTCAAAGCGATGACCAAGCCTGTAGATATCTCTGCTGATTATGAGCTTTTCCTTCTTCAAATTATATAG
CCAATATCCTCAAAGAGATAAATTTGATTAAGACCGACTTTCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACTGCCCTTGTTACTAGAAATATGAAGCGTGCTAGCGCGCACTTCCTATTAAC
CAATTCACCAATTTTAAGATTTGTAAACAAAGATAATAGGAGCCGAAGTCAATCCCTTAAAACACTCCTCCCCGAGGGGACGTTATCGGTCGCTTCGTTC
CCTTGTTTACTGAACTCTTTTCAGGAGATAGGTCTACCGTTGCAAACTCATCTGCTTGTAAATTCATTGTGTAAAATAACTCGTAAATTCATTGTGCCAG
AATTGATCACTGATC