Detailed information on CNT30100064


BLAST search results

BLAST vs Swiss-Prot:
sp|B6TVL4|CAS_MAIZE, E-value = 1e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691121Oryza rufipogonOryza sativa97.4598.89100268forward
CNT30666747Oryza rufipogonTriticum dicoccoides35.6423.2286.7398forward
CNT30689632Oryza rufipogonTriticum urartu35.6420.2186.7398forward
CNT30340732Oryza rufipogonEragrostis tef46.1832.3288.19127forward
CNT30364640Oryza rufipogonSorghum bicolor30.9121.9183.5385forward
CNT30595766Oryza rufipogonOryza meridionalis102.1898.9495.73281forward
CNT30575377Oryza rufipogonOryza barthii5265.699.3143forward

Expression of CNT30100064

Peptides detected in this lncRNA

>peptide 1 (90 aa)
DRDELVLRVRGELWHAGFGLVLLGPHIDQHVILRGHHVQSLCSGQVREERRSGDHDVVRGAQRPDGLHRRRRDGLRGVDDLRALLRRVRDG

>peptide 2 (30 aa)
IEMSLFFAFEGSCGTPVLALSFSVLTSIST*

Sequence

>CNT30100064
GATAGAGATGAGCTTGTTCTTCGCGTTCGAGGGGAGCTGTGGCACGCCGGTTTTGGCCTTGTCCTTCTCGGTCCTCACATCGATCAGCACGTAATCTTGC
GAGGTCACCATGTCCAGAGCTTGTGCAGCGGTCAGGTACGCGAGGAACGCCGCTCCGGCGACCACGACGTAGTCCGCGGAGCCCAGCGACCCGATGGTCT
CCACCGTCGCCGACGCGATGGGCTTCGCGGCGTCGATGACCTTCGTGCCCTGCTGCGCCGCGTCCGCGACGGTCT