CANTATAdb - search

Detailed information on CNT30100056

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000877, E-value = 7e-143

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30115695	Oryza rufipogon	Oryza nivara	91.1	99.59	98.96	962	forward

Expression of CNT30100056

Peptides detected in this lncRNA

>peptide 1 (69 aa)
LFSASLSRHSSLSTPKPKKPRERAPTLPLHLSFVVGRRKGGRRRSPTSRLHPYLIHVLLSSLHAEQILF*

>peptide 2 (67 aa)
MPSKSSFDSILFRPLQRRERDLVYGSSGARSKRRRSRHRRRSERCRPSQAEPSRQRLLLEVLLKTPQ*

>peptide 3 (71 aa)
MAQQVRRSATVFFTSGCRRHCRFRLLRSSSSRSSRRRSPAEGRRRREDARAVAVTKTPEKFNLTRGFRFSL*

Sequence

>CNT30100056
CTCTTCTCCGCCAGTCTGAGTCGCCATTCTTCACTGTCCACCCCTAAGCCGAAGAAACCCAGGGAGAGAGCTCCAACTCTCCCTCTCCACCTCTCTTTCG
TCGTCGGCCGCCGAAAAGGGGGACGCCGCCGATCGCCAACGAGTCGTCTCCATCCCTATCTGATTCACGTTCTATTATCTTCTCTCCATGCCGAGCAAAT
CCTCTTTTGACTCCATCTTGTTTCGTCCACTGCAGCGACGGGAACGCGACCTCGTCTACGGGAGCTCTGGAGCGCGCTCCAAGCGCCGCCGCAGCCGACA
TCGTCGCCGTTCCGAGCGCTGTAGACCGAGCCAAGCCGAGCCGTCACGCCAACGCCTTCTCCTTGAAGTCCTCCTCAAAACCCCTCAATAATCCCAGGCA
ATGGCGCAGCAAGTGCGGAGATCGGCCACCGTCTTCTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTCCGCAGCTCGTCGTCCCGTTCGA
GCCGTCGCCGTTCACCCGCAGAAGGACGCCGTCGCCGGGAGGATGCGCGAGCCGTTGCTGTCACCAAGACCCCGGAAAAGTTCAACCTAACCCGCGGTTT
TAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGTTTCTTCTAGGACTTGAACTTAATGGGGTAAACCCCTAGTCGGTGTGCTTGTGGATTGGGTAGA
CAAGCTTCCGTTGTTCTCTCATGTGTCTATTTGGCCGGTCGGCCTATGTAATTATTAAGTTGTTGTAAGTCTTAAGTTTCTTTCATCTTAGTTGTGTTTG
CTATGTATAATCATGCTTAAGATGAAAGTGTGGATCTAGTGCACATCCTAAGAATTCACATGAGTATGAGTTAGAAATATTTGAGAGGTTGTAGATCTTT
AGCCATTTTGTCAAGTCTAAATCTCCTGAATGTGTAACACATCTGGTCGCCACCTTCGAGTGGTTTGACGGGCACATCTCAGGCTGAAGTTGACTGGCAA
GCTAAAGGTCCAGCAATGTCTCTAATATTCCTCTCTCGAGACGTCGGATGTTTCAT