Detailed information on CNT30100050


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01300|NU1M_PETHY, E-value = 9e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30437037Oryza rufipogonAegilops tauschii35.4545.0998.72156reverse complement
CNT30598800Oryza rufipogonFraxinus excelsior40.9148.3990.56180reverse complement
CNT30207841Oryza rufipogonHelianthus annuus49.558.1489.45218reverse complement
CNT30480890Oryza rufipogonArabidopsis halleri36.5948.3590.06161reverse complement
CNT30574571Oryza rufipogonVitis vinifera82.055.8793.91361reverse complement
CNT3052251Oryza rufipogonAmborella trichopoda75.455.6688.25332reverse complement

Expression of CNT30100050

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRNVHVSSQGSFLVLGHRAGSAVRGTRVLVLPRCEEPRR*

>peptide 2 (86 aa)
GPEQVGLGYRAVSAVGVTEDVLVRFIVGYDILVDCWERPLYSKYAFLGALRSAAQMVPYEVSIGLILIVRLVSTFGSAKAIARIFP*

Sequence

>CNT30100050
AGGGCCAGAGCAAGTTGGGTTGGGGTATAGAGCCGTAAGCGCGGTGGGGGTGACAGAGGATGTGCTCGTACGGTTCATAGTTGGGTATGATATTCTCGTG
GATTGTTGGGAACGTCCTCTATATTCGAAATATGCCTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTCCCTTATGAAGTCTCTATTGGTCTTATTC
TTATTGTGCGCCTTGTGAGCACGTTTGGATCCGCGAAGGCAATCGCTCGGATCTTCCCCTAACCCAACCCGGGAACGGACCGGAGGGAACCGCAGCATGA
GGAATGTCCACGTCTCGTCGCAAGGCTCATTTTTAGTTTTGGGTCATAGGGCGGGCAGTGCAGTCCGGGGCACAAGGGTCCTGGTACTACCCAGGTGCGA
AGAACCCCGGAGGTGACTGCAATGAGCAAAAATGTCACTC