Detailed information on CNT30100035


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693767Oryza rufipogonOryza sativa34.218.7788.55131forward
CNT30553475Oryza rufipogonOryza glaberrima99.7440.1398.43382forward

Expression of CNT30100035

Peptides detected in this lncRNA

>peptide 1 (46 aa)
GPWRFIAPRRSLRFPPPDTSLPHAGILDDLPNGRLPSFCMESPTLV*

>peptide 2 (63 aa)
MADNRISLEEVAKYKSVITKEFRSEAKGYKFYNDFPFVDIFLKTRCIFRVTKSRRTVDIAISEF

>peptide 3 (65 aa)
APGASLPLAGPFAFPRRTPRCPTPGFSMISPTAACPRFAWSRRPSSDLESESLPPLYFYSEIWNG*

Sequence

>CNT30100035
GGCCCCTGGCGCTTCATTGCCCCTCGCCGGTCCCTTCGCTTTCCCCCGCCGGACACCTCGCTGCCCCACGCCGGGATTCTCGATGATCTCCCCAACGGCC
GCCTGCCCTCGTTTTGCATGGAGTCGCCGACCCTCGTCTGATTTGGAATCGGAGTCGTTGCCGCCTCTCTATTTTTATTCAGAAATTTGGAATGGCTGAC
AATCGCATTAGTTTGGAGGAGGTTGCAAAGTATAAAAGTGTGATAACCAAGGAGTTTAGAAGCGAGGCAAAAGGATATAAGTTCTATAATGATTTTCCCT
TTGTTGATATATTCTTGAAAACTAGATGTATCTTTAGAGTTACAAAAAGCAGACGAACAGTTGATATTGCCATCTCTGAATTC