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Detailed information on CNT30100016


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40477|ERF4_TOBAC, E-value = 7e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30585986Oryza rufipogonMusa acuminata13.3620.6282.14140forward
CNT30474096Oryza rufipogonSaccharum spontaneum18.1349.8786.32190forward
CNT30572283Oryza rufipogonVitis vinifera10.423.0987.16109forward
CNT3051215Oryza rufipogonCucumis sativus13.9324.0181.51146forward

Expression of CNT30100016

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MRCWTCNGISSERKANAGAGDCSHSSRAVEQIQVQSRRLNPAATGVYRAIAAGAAATADHRL*

>peptide 2 (86 aa)
MQTESLFLPWHPGTLERRRRRRGRPPLPCRRYRATPGSSWQGHGSPLRNAPTGACGRPCSEDPRLRHLRRRQDQARWVAPQQPSPP*

Sequence

>CNT30100016
GTGCACAGATATTTTTGTGACTTTCTGAATAATTTCTTCATACTAATATAAAGGAATACATACACTCCACGGTTTAGTCCATCTCATCGCCGGCATGATC
TGTTCTAATTAACAGATCCCAAGATGAATTTCGCCCTCGGCAGAAAAACTATTTACAAGGCTCTTCCGTCTCTCACAGGCTACTAAACAAAAACACAGAG
GACCAAAACATCGGAGAGAAATATCCATCAAAGAAGAAAATAAGAGAGAAACTACAAAGTCGTCAGCTAACCCATCCTGAGCTAGTTCTCTACCGGCGGC
GGCCGGTTCAGATCCAGATCGAAAGCTGCCGCCTTGTTCGCCGTAACCGCTGGAGGTGACGGCGCGAGATCAACCACCGACGAGGAGTCGGAGTCACTTT
GTGCAACCGCCGCCACGGTGACCGGCGGTGCAAGCTTCATCATACGGTATCCAGCCTCAGCTGCGGCAGCCGCTGCAGCCTGCTCATAGAAAAAGTAAGG
ATGCGTTGCTGGACGTGCAACGGGATATCCTCTGAAAGGAAAGCGAACGCCGGTGCCGGCGACTGCAGTCACAGCAGCCGCGCGGTGGAACAAATCCAAG
TCCAGAGTCGGCGTCTGAACCCCGCCGCCACCGGTGTCTACCGTGCTATTGCTGCTGGGGCTGCCGCCACAGCCGACCATCGACTGTGATGCAAACGGAA
AGTTTGTTTTTGCCTTGGCACCCCGGAACTCTCGAGCGGCGGCGTCGTAGGCGCGGGCGGCCTCCTCTGCCGTGTCGTAGGTACCGAGCCACACCCGGCT
CTTCTTGGCAGGGTCACGGATCTCCGCTGCGTAACGCCCCCACGGGCGCTTGCGGACGCCCCTGTAGTGAGGACCCCCGGCTCCGACACCTCCGCCGACG
CCAAGACCAAGCCCGGTGGGTGGCGCCACAGCAACCTTCTCCACCGTAGCTGCTCTGGGCGCCATGGGTGCAGCAGGTTTACAAGTGGCGGGCGCGGATC
TCTGGTAAACCGGGTGGGTGTTTTGGGAGGTTGGGTTTGGGTGTGTGT