Detailed information on CNT30100013


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30349956Oryza rufipogonEragrostis tef39.6476.8391.96199reverse complement
CNT30174954Oryza rufipogonVigna angularis12.5524.6193.6563forward

Expression of CNT30100013

Peptides detected in this lncRNA

>peptide 1 (91 aa)
LQLVDMSILLILLSSRPGCYTLTPLRDRRPRRSTLGQERPLLATSMCPVPAHVPCCVTTPGLHQPCAPCLRNCDTRARETASVIGHRPRVS*

>peptide 2 (60 aa)
MLHPHPLKRSTPPSINPRPGTSSLGHVHVSSASACAMLCNHSRSTPAMRTMPAQLRHTRP*

>peptide 3 (31 aa)
MEFFGDWLPEKKLQLVDMSILLILLSPRPGCY

>peptide 4 (49 aa)
MSFLHTLSSLVCTREEFPGRSPIPNCSRPSTLNHGVLWRLASGKEVATC*

Sequence

>CNT30100013
GTTGCAACTTGTTGATATGAGTATTCTATTAATCCTATTAAGCTCTAGGCCGGGATGTTACACCCTCACCCCCTTAAGAGATCGACGCCCCCGTCGATCA
ACCCTAGGCCAGGAACGTCCTCTCTTGGCCACGTCCATGTGTCCAGTGCCAGCGCATGTGCCATGCTGTGTAACCACTCCCGGTCTACACCAGCCATGCG
CACCATGCCTGCGCAACTGCGACACACGCGCCCGTGAAACCGCGAGTGTCATAGGTCATAGACCGCGAGTGTCATAGGTCATAGACTGCCCTCACAGAGG
AACACATGTCTTTTCTGCACACTTTGTCCTCACTCGTGTGCACCCGGGAAGAATTTCCCGGTCGGTCACCCATCCCAAATTGCTCCAGGCCAAGCACGCT
TAACCATGGAGTTCTTTGGAGATTGGCTTCCGGAAAAGAAGTTGCAACTTGTTGATATGAGTATTCTATTAATCCTATTAAGCCCTAGGCCGGGATGTTA
CA