Detailed information on CNT30100012


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000279, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552380Oryza rufipogonOryza glaberrima56.194.0499.31421forward
CNT30110178Oryza rufipogonOryza longistaminata36.2448.4799.35918reverse complement
CNT30574808Oryza rufipogonOryza barthii51.0993.599.461294forward
CNT30117877Oryza rufipogonOryza nivara54.9595.0299.711392forward

Expression of CNT30100012

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MISISTMHMHNICDAYCIKFLENMYVCRPVVVNCK*

>peptide 2 (36 aa)
LSLSSIHQRFSCSCIVAITARASLIAPKPKFIASTP*

>peptide 3 (40 aa)
MYSPHVKAQQKSPPRPPSSSSLFFSFSPSLPHVLSSAAAS*

>peptide 4 (41 aa)
MWFSSSFRNPSLLFYCCSSGSKVILLELSFSTLSLVDCSPS*

>peptide 5 (72 aa)
MSKPNRKAHLDHLLPLLSFSRSPLLSLTFSPAPPLPRQRRRPPLRRLPHPTPATPLAVAGLNQLLGSSLLCP*

>peptide 6 (88 aa)
MFLHCRHNSTCKSDRSQTKIHRFHALAARASLIAPKPKFTASTLIVKHPTCQIPIGSTHITSNLPSHTKRTTIKHIPFRFCSTFKSTI*

Sequence

>CNT30100012
GTTTGTCGTTGTCTAGCATACATCAACGGTTTTCATGTTCCTGCATTGTCGCCATAACAGCACGTGCAAGTCTGATCGCTCCCAAACCAAAATTCATCGC
TTCCACGCCCTAGCAGCACGTGCAAGTCTAATCGCTCCCAAACCTAAATTCACCGCTTCCACGTTGATTGTCAAGCATCCCACATGTCAGATTCCAATAG
GCTCCACGCACATCACATCTAATTTGCCTTCCCACACCAAGCGCACAACCATTAAACATATCCCGTTTCGCTTCTGCTCTACCTTTAAGTCTACAATTTA
AATGATGTCAAACGATTGCCAACTCGTGAATTAGAAAATAACCGAGTCATTAATATAACAAACAAATATATAGTAACAAGCCTCATAATCCATATGACAT
GTGGGCCCATAATAATTAGGAAATCTAAATTAATAAATAATTAAAGTAGGTTCACTGTGTAGTGGACACGAGGTTTTTGAATATACACATGGAACTCGGT
CTACATGAAGTCATGAACAAACAAACACCTAATTGAGAAACAAACCATATGATAATTTTAATAATACGTTCTTGAGGAAGTGCCCGGTGCCTGGTAGCTT
GAAGTGGTCAAATTTCAATAATACGTTATCGAGGAAGTGCCTGGTATCTTGAAGTGACCACTGACGGTGACCTATACACCGACGGAGACCATGCAGGTGG
TGTTGAGTAGGCCTATGTGAGATTTAAGAGGCGGTGTAGAGTGTGAAGATACTCGCAAAGTCGCAATGGGAGGCAAAGTGGTCGGTGTCACAAGGCATCG
GTGAGGCCCAACAGTAAAAGTGGTTTGATGAAAATGACAACGTACTAGATCCCGTTGCAACGCACGGACATATTTGCTAGTTCAATAATACTCCTATGTA
CAGTCCACATGTCAAAGCCCAACAGAAAAGCCCACCTAGACCACCTTCTTCCTCTTCTCTCTTTTTCTCGTTCTCCCCTTCTCTCCCTCACGTTCTCTCC
AGCGCCGCCGCTTCCTAGGCAGCGCCGGCGACCTCCCCTGCGCCGGCTGCCACACCCCACTCCGGCGACCCCTCTAGCCGTCGCCGGGCTGAATCAGCTT
CTTGGCTCCTCACTTCTCTGCCCCTAAGCTAACCCTAGCCTCTGACCTCTTCAACCTAAGATGCAACCGGCGGCCAATTCTGGCGAGATAAGGATTTAGG
GAAGTTTCCCAGGCCCCTACCGCTGGATCTACTCTCCTCCCCTATTTTAATTTTTGGTTACCTCTGATGATTCTACCGTGATTGAAAAATATGTGGTTCA
GCTCCTCCTTCAGAAATCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTGATTTTGCTAGAACTGAGCTTCTCCACCTTGAGCTTGGTTGA
TTGTTCCCCCTCTTGAACTGAACCCCCTGCTCTACTTGGAACTCAGGTAATTCTCCTCCTTGGCTCTTGCTCTACTGGTAATACTTGACTGCTTCCTGAC
AGGATCTGCTACTGGTGATTCTCTTCCTCCTCTTGAGACTAATCCTCTTTCTTGATTTTCGCTCTATCTTGCTTCTTGACCTGAGTTTCATCTCCTCCCA
TAGTTGGAGTTCATCCAAGAACTGAACACCTCTACTTTTCCTTCAGATTTGGTTCACCACTCTCTGATTGCTTGGCCATGGTTACTACTACTTGTTGATT
CATGTATTGGTTTGAGCTGGACTTCAGTTGAGCTATTTCTGTCCGGGTGGAGCTAACATTCTAGCTGATTTTCCTAAGCTTGGTTCTATGATTCTAACTA
CTACTGCCGCAGCTGCTGCTATTGCTCTACTGCGGTAGGTGCTTGAGGTGGTTTTCCAGCCGATGCAACCGAGGCTGGGGTTCACTGAATAGTTTGGTTG
ATATATATGTGAATTTGGTGAAGACTAGGTGACTCACCTACTTTAGTTTTGGTGGTTGTTTCACTGACTGACACCTAAGCAGTGCTTGATCGGTGGAGTA
ATGTGGGATTTCACTAAATTTTTCTAGTTACATAAATTCTGATACAATTAGGTACTTTTGCACTTGAGTCCCTCGGGGTCTCTAAAATTGAAGTTTACTC
TGAGATTAGGGACTGATTTGTAATTGTTCTAGAACTCAAGAGTTTTTCTGAAAACTAAATAATTATTGAATCTTTGACTGAGATGGTTCAGTTTATGATA
TGATATCCATAAGCACCATGCATATGCACAATATATGTGATGCATACTGTATAAAATTTCTAGAGAACATGTATGTATGCAGACCTGTAGTGGTAAATTG
TAAATAAAGAACTGTGATTTCTACTGTGCACATGTGTACCTCGCTGCATAACAACTAATCTACGCTATAGTTTAACTAAAACTAAATTATCCCACTCCTC
ACCAGGTTTACTAACTAAAAATAAATCAATGATGCATATGGATATGACTTGATAAATAAATAACAAGAAAACGATCAAAAAATCATTTAAGATCTATAAT
AGAATAACAATCAACATATTTATAGGTCTTATC