Detailed information on CNT30100005


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5JN63|CESA4_ORYSJ, E-value = 1e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532104Oryza rufipogonEucalyptus grandis34.3321.5183.7580reverse complement
CNT30499576Oryza rufipogonCoffea canephora27.911.5787.6965forward
CNT30629098Oryza rufipogonVigna unguiculata24.4614.8887.7257forward
CNT30689491Oryza rufipogonTriticum urartu33.9111.6392.4179forward
CNT30364097Oryza rufipogonSorghum bicolor33.9117.2193.6779forward
CNT30115557Oryza rufipogonOryza nivara57.5121.72100134forward

Expression of CNT30100005

Peptides detected in this lncRNA

>peptide 1 (40 aa)
VGGGGLGAADERVDLDPEEGEDGGEQDRPEHDDGGRRRHR*

>peptide 2 (37 aa)
MTQNCSLRHQSSMPMPLHRSSRTLVTMMEMKRPRNHMV

>peptide 3 (76 aa)
LVVVVSELPMNGSILTQRREKTEASRTDQSTTMVGGDATDDPELLVAPPVLDADATPPQLQDARHDDGDEEAKKPYG

Sequence

>CNT30100005
GTTGGTGGTGGTGGTCTCGGAGCTGCCGATGAACGGGTCGATCTTGACCCAGAGGAGGGAGAAGACGGAGGCGAGCAGGACAGACCAGAGCACGACGATG
GTGGGCGGAGACGCCACCGATGACCCAGAACTGCTCGTTGCGCCACCAGTCCTCGATGCCGATGCCACTCCACCGCAGCTCCAGGACGCTCGTCACGATG
ATGGAGATGAAGAGGCCAAGAAACCATATGGTT