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Detailed information on CNT30100001


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000578, E-value = 4e-141

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678279Oryza rufipogonSetaria viridis78.6823.6698.03203forward
CNT30201083Oryza rufipogonPisum sativum97.2911.7685.66251forward
CNT30181337Oryza rufipogonSecale cereale98.0611.7698.02253forward
CNT30292770Oryza rufipogonTriticum aestivum98.0618.6298.02253forward
CNT30225846Oryza rufipogonHordeum vulgare47.6710.8595.93123forward
CNT30565170Oryza rufipogonActinidia chinensis58.5313.2290.73151forward
CNT30541452Oryza rufipogonBrassica napus98.0615.1886.17253forward
CNT30239038Oryza rufipogonBrassica oleracea98.0620.2983.4253forward
CNT30145435Oryza rufipogonMedicago truncatula70.5450.2889.01182forward
CNT30444217Oryza rufipogonAegilops tauschii98.0644.797.23253forward
CNT30257373Oryza rufipogonAvena sativa98.0638.197.63253forward
CNT3060115Oryza rufipogonArabidopsis lyrata98.0610.6786.17253forward
CNT302912Oryza rufipogonZea mays97.2931.3497.61251forward
CNT30606537Oryza rufipogonGossypium raimondii94.5714.5282.79244forward
CNT30687498Oryza rufipogonTriticum urartu98.0618.6398.02253forward
CNT30477828Oryza rufipogonArabidopsis halleri53.126.9288.32137forward
CNT30595572Oryza rufipogonOryza meridionalis78.6823.6998.52203forward
CNT30355674Oryza rufipogonLactuca sativa82.952987.85214forward
CNT3058691Oryza rufipogonAmborella trichopoda97.2956.1588.45251forward
CNT30578317Oryza rufipogonOryza barthii75.1940.0897.42194forward

Expression of CNT30100001

Peptides detected in this lncRNA

>peptide 1 (32 aa)
XFSIKSSRNKSTKPKVISRSPSNLPTTVPAWI*

Sequence

>CNT30100001
NNNNNTTTTCAATAAAATCATCGCGCAATAAATCAACAAAACCTAAAGTCATTTCGCGTTCCCCTTCTAACTTACCTACTACTGTACCAGCGTGGATATG
ATCTCCCCCAGACATACGCAATGCTTTAGCTAATACACGGAAATGCATACCATGATTTTTCTGTCTATCAATAACTGCATGCATTGCTCGGTGAATGTGA
AGAAGTAGGCCGTTGTCGCGGCAATAATGAGCCAAACTAGTATTTGCGGTGAATCCCC