SEARCH OPTIONS

lncRNA id
CNCI status
Max. peptide length
Is conserved?
Organ-specific expression:
Max. expression
No. of exons
Order results by

Current search details:

Found 3407 records

CNCI status:   #
Max. peptide length:   #
Is conserved:   #
Organ specific:   #
Max. expression:   #
No. of exons:   #
Order by:   lncRNA ID


Record details CANTATAdb ID Species Location CNCI status (score) Swiss-Prot best hit Max. peptide length Max. expression No. of exons Additional notes
CNT30509399 Solanum lycopersicum 4:58089721-58090860 (-) noncoding (-0.02048)- 62 581.67 3Conserved counterparts: CNT3092879
Expressed preferentially in root
CNT30509398 Solanum lycopersicum 4:54325510-54326294 (+) noncoding (-0.0004096)- 41 28.27 1Expressed preferentially in leaf
CNT30509397 Solanum lycopersicum 4:54442237-54443206 (+) noncoding (-0.0004096)- - 7.12 2
CNT30509396 Solanum lycopersicum 4:54327515-54371056 (-) noncoding (-0.0004096)- 42 66.21 2Expressed preferentially in fruit
CNT30509395 Solanum lycopersicum 4:58274217-58280101 (+) coding (0.045)- - 6.51 3Expressed preferentially in leaf
CNT30509394 Solanum lycopersicum 4:20951915-20953472 (-) noncoding (-0.0004096)- 61 5.14 2
CNT30509393 Solanum lycopersicum 4:2512074-2527785 (+) noncoding (-0.0004096)3e-17 (sp|P0C897|Y3264_ARATH) 51 4.6 2Conserved counterparts: CNT3093367
CNT30509392 Solanum lycopersicum 4:24160578-24166263 (+) noncoding (-0.0004096)0.00001 (sp|Q9SG02|RDR6_ARATH) 53 8.37 1
CNT30509391 Solanum lycopersicum 4:41130838-41134492 (+) noncoding (-0.032768)- 52 6.21 2
CNT30509390 Solanum lycopersicum 4:61406091-61406883 (-) noncoding (-0.0004096)- - 12.38 2Conserved counterparts: CNT3092772
CNT30509389 Solanum lycopersicum 4:3877203-3881406 (+) noncoding (-0.0004096)0.000000000000003 (sp|C7J4U3|OST4A_ORYSJ) 45 28.38 2Conserved counterparts: CNT30261656, CNT30533280, CNT3082234, CNT30572643
CNT30509388 Solanum lycopersicum 4:47495695-47497529 (-) noncoding (-0.0004096)- 48 12.39 2Conserved counterparts: CNT30645856
Expressed preferentially in root
CNT30509387 Solanum lycopersicum 4:58904432-58905205 (-) noncoding (-0.0004096)- 34 5.67 2
CNT30509385 Solanum lycopersicum 4:48191310-48192102 (-) noncoding (-0.1024)- 40 9.26 1
CNT30509384 Solanum lycopersicum 4:59810971-59811931 (-) noncoding (-0.0004096)- 37 16.97 2
CNT30509383 Solanum lycopersicum 4:1754145-1757293 (-) noncoding (-0.0315392)- 65 18.31 3Expressed preferentially in fruit
CNT30509382 Solanum lycopersicum 4:2599746-2600734 (-) noncoding (-0.0086016)5e-43 (sp|P09043|G3PA_TOBAC) 80 1163.67 2Conserved counterparts: CNT30490066
CNT30509380 Solanum lycopersicum 4:24197155-24201474 (-) coding (0.114)- 98 10.31 2
CNT30509379 Solanum lycopersicum 4:2996258-2997473 (-) noncoding (-0.0241664)- 85 57.34 2
CNT30509378 Solanum lycopersicum 4:60899389-60899697 (-) noncoding (-0.016384)- 32 1265.09 1Conserved counterparts: CNT3092889
CNT30509377 Solanum lycopersicum 4:21197413-21198400 (-) noncoding (-0.0004096)- 41 27.73 2
CNT30509376 Solanum lycopersicum 4:7900474-7903814 (+) coding (0.089)0.00000004 (sp|P0C2F6|RNHX1_ARATH) 94 3.66 1
CNT30509375 Solanum lycopersicum 4:55057363-55058389 (+) noncoding (-0.0004096)- 54 282.02 2
CNT30509374 Solanum lycopersicum 4:41197414-41198146 (-) noncoding (-0.0004096)- - 817.93 2Conserved counterparts: CNT3077213, CNT3017337, CNT30695659
Expressed preferentially in root
CNT30509373 Solanum lycopersicum 4:42066741-42068084 (+) noncoding (-0.0004096)- 58 3.54 2
CNT30509372 Solanum lycopersicum 4:39859728-39860019 (+) noncoding (-0.0004096)- 55 3.66 1
CNT30509371 Solanum lycopersicum 4:52891084-52892730 (-) noncoding (-0.217088)- 52 6.41 1
CNT30509370 Solanum lycopersicum 4:21924581-21926288 (-) noncoding (-0.02048)- 65 6.41 2
CNT30509369 Solanum lycopersicum 4:66153721-66155300 (+) noncoding (-0.12288)- 70 8.42 2Conserved counterparts: CNT3093212
CNT30509368 Solanum lycopersicum 4:60517699-60521236 (+) noncoding (-0.0004096)8e-89 (sp|O82161|PHI1_TOBAC) 74 97.94 2Conserved counterparts: CNT3092984
Expressed preferentially in root
CNT30509367 Solanum lycopersicum 4:1896306-1896961 (-) noncoding (-0.118784)4e-39 (sp|Q8LDS2|XTH27_ARATH) 38 3.05 3
CNT30509365 Solanum lycopersicum 4:17080271-17095807 (-) noncoding (-0.0004096)- 52 34.27 2
CNT30509364 Solanum lycopersicum 4:24210860-24215671 (+) noncoding (-0.008192)- 98 20.98 2Expressed preferentially in leaf
CNT30509363 Solanum lycopersicum 4:64954716-64954958 (-) noncoding (-0.0004096)- 60 34.89 1Expressed preferentially in fruit
CNT30509362 Solanum lycopersicum 4:37229609-37231607 (+) noncoding (-0.0004096)- 98 10.64 2
CNT30509361 Solanum lycopersicum 4:59024202-59026276 (+) noncoding (-0.0475136)- 89 14.77 2
CNT30509360 Solanum lycopersicum 4:52020558-52022069 (+) noncoding (-0.0004096)- 55 47.07 2
CNT30509359 Solanum lycopersicum 4:7299199-7301514 (-) noncoding (-0.0004096)- - 3.3 2
CNT30509358 Solanum lycopersicum 4:23095645-23096511 (+) noncoding (-0.0004096)- 44 7.47 2
CNT30509357 Solanum lycopersicum 4:290581-292444 (+) noncoding (-0.032768)- 72 52.74 2Expressed preferentially in root
CNT30509356 Solanum lycopersicum 4:33371872-33374396 (+) noncoding (-0.0004096)- - 5.32 2
CNT30509355 Solanum lycopersicum 4:51321624-51323687 (+) coding (0.046)- 81 5.41 2Expressed preferentially in root
CNT30509354 Solanum lycopersicum 4:60517245-60524514 (+) noncoding (-0.024576)5e-156 (sp|O82161|PHI1_TOBAC) 39 18.12 2Conserved counterparts: CNT3093248
Expressed preferentially in root
CNT30509353 Solanum lycopersicum 4:7296334-7301495 (-) noncoding (-0.0004096)- - 9.71 3
CNT30509352 Solanum lycopersicum 4:9484656-9488770 (+) noncoding (-0.0004096)- 71 24.2 2Conserved counterparts: CNT3092592
CNT30509350 Solanum lycopersicum 4:60517249-60520690 (+) noncoding (-0.0004096)3e-91 (sp|O82161|PHI1_TOBAC) 32 65.64 2Conserved counterparts: CNT3093248
Expressed preferentially in root
CNT30509349 Solanum lycopersicum 4:15942943-15955673 (+) noncoding (-0.094208)- 81 1.24 2
CNT30509348 Solanum lycopersicum 4:34193120-34202109 (-) noncoding (-0.049152)- 31 3.53 2
CNT30509347 Solanum lycopersicum 4:63670805-63671533 (-) noncoding (-0.0004096)- - 500.69 2Expressed preferentially in root
CNT30509346 Solanum lycopersicum 4:1812258-1820562 (+) noncoding (-0.045056)4e-31 (sp|Q6L3L0|R1B23_SOLDE) 50 11 2Expressed preferentially in root