Detailed information on CNT3099914


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689968Oryza rufipogonOryza sativa50.2410099.69640forward
CNT30105452Oryza rufipogonOryza longistaminata54.6387.2294.97696forward

Expression of CNT3099914

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MDGHSHVSSSADLAGLCRATHCPTISWLTCYDYTYIPSNDMHESQTQTAPISLSSSLVSENAH*

>peptide 2 (86 aa)
VLSPLGRRRRRRRQHLHRHLAIIIHGFSSGPLALATLRCLGIGNWESGEIQRWEITWGMPDRCDAAERRRRAERQGARIGAAFSPP*

>peptide 3 (77 aa)
MFIFSKDGVFQAWSMVFFLIYSGIVSCFCCHEIMRIPWNKTRGKYKHLRSPRHGQKERNGWHGWLAGALVCVVCDQS*

>peptide 4 (71 aa)
MAKRKEMDGMAGLLELSSVSSVINHDSVETTKACKRPIGIKKTPGYFNYLQQQLLLYLYMRVSSCLIVYEL*

>peptide 5 (63 aa)
CPLTARPPPATAKTTSPSPSRHNNPWLFLWPVSPSHITLFGDWELGIGRDSEMGDHLGHARSM*

Sequence

>CNT3099914
CTGTCCTCTCACCGCTCGGCCGCCGCCGGCGACGGCGAAGACAACATCTCCATCGCCATCTCGCCATAATAATCCATGGCTTTTCCTCTGGCCCGTTAGC
CCTAGCCACATTACGTTGTTTGGGGATTGGGAATTGGGAATCGGGAGAGATTCAGAGATGGGAGATCACCTGGGGCATGCCAGATCGATGTGACGCCGCC
GAGCGCCGGCGGCGAGCGGAGCGGCAGGGGGCGAGGATTGGCGCTGCGTTCTCCCCTCCCTGAATTCTTCCGCCCCGTTTCTGGATTTCTCGGTCGCAAT
CCAGGCTCAGGCTCAGCAGCAGAAGCAGCAGCAGTAGTACCCCATCATCATGCATCCATGGTGAGAGATGGATGGTCACTCACATGTGAGCAGTAGTGCC
GATCTTGCCGGACTCTGCAGGGCCACCCACTGCCCAACCATTTCTTGGCTAACTTGCTACGACTACACATATATACCTAGCAATGACATGCATGAAAGCC
AAACACAAACTGCTCCAATATCTCTATCTTCTTCTTTAGTTTCTGAAAATGCACATTGACATCATTTCCTCTTCAATGGAGTAGATAAACTAGATAAGCT
ATGTTTGAGGGATAAATTTAAGTATGACACATAAATGGGGGCTATTGCTAATAATATAATTATACTCTTTCCATCCAAAATATGAAAACATTTCTAGGCC
ACTGATTCTAATGCACAAACAATGTACATTTTTAACCAATGAGATGCTTGGGAAAAGGAATACTATAAGCAATTCAAATATCAAAATTTGACTACTGAAT
TGAAGTGACTAGAAGAGAATTCTTTTTCCCTCCACCTTTGTTTTTGCTGAAGAACCTAAAAATGTTTATATTTTCAAAAGATGGAGTATTTCAAGCTTGG
TCTATGGTGTTTTTTTTAATATATTCAGGGATTGTTTCCTGTTTCTGCTGCCATGAAATCATGAGGATTCCCTGGAACAAGACAAGGGGGAAATACAAGC
ATTTGAGATCACCAAGGCATGGCCAAAAGGAAAGAAATGGATGGCATGGCTGGCTTGCTGGAGCTCTCGTCTGTGTCGTCTGTGATCAATCATGATTCCG
TAGAAACTACCAAAGCATGCAAAAGGCCAATTGGCATAAAAAAAACCCCTGGTTATTTTAATTACCTACAGCAGCAGTTGCTCCTATATCTATATATGCG
TGTTTCTTCATGTTTGATAGTATATGAATTATGAGTATATAATGACAGAATCAAATAAAACTTTTATGTGTCAT