Detailed information on CNT3099616


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000026, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109015Oryza rufipogonOryza longistaminata25.555.5197.87141forward
CNT30116758Oryza rufipogonOryza nivara96.5654.2194.01534forward

Expression of CNT3099616

Peptides detected in this lncRNA

>peptide 1 (97 aa)
SFHPLQPRERRARRRCSGARTGRRRQVLVVVPTEPNHPKPNSCATRIASTSSSKALKNPSQCRNDEGDRRLLPQVRPPTTVVDSLIPGELRRNSSLV*

>peptide 2 (65 aa)
VISSTAATGTQSSPTMLWSAHWTPSSGSRRRSDGTEPPQAELLRHQDSLDVLFESSQEPQPVPQR*

>peptide 3 (50 aa)
MVFEPFHSISWQPGVRMVVVTVAMPISAAVGISSASSSLSRPTRTSSEIR*

>peptide 4 (46 aa)
HFIHCSHGNAELADDALERALDAVVRFSSSFRRNRTTPSRTLAPPG*

Sequence

>CNT3099616
GTCATTTCATCCACTGCAGCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCCGTCGTCAGGTTCTCGTCGTCGTTCCGACG
GAACCGAACCACCCCAAGCCGAACTCTTGCGCCACCAGGATAGCCTCGACGTCCTCTTCGAAAGCTCTCAAGAACCCCAGCCAGTGCCGCAACGATGAGG
GAGATCGGCGTCTTCTTCCTCAAGTCCGGCCGCCGACCACCGTCGTCGATTCCTTGATCCCGGGTGAGCTTCGGCGCAATTCCTCACTCGTGTAGCATCT
TTAGATGGTCTTTGAGCCGTTCCACTCTATTTCTTGGCAGCCCGGAGTCCGGATGGTGGTTGTCACCGTTGCCATGCCGATTTCCGCCGCCGTGGGGATA
TCCTCTGCATCATCGTCACTATCCAGGCCTACCCGTACCTCGTCCGAGATTCGATGATTGCTTAAACGGTGAAGAAGTGATTTAGGTGCTGACTTTTTCC
AGTTACAAGGCAAGTCTCACCTCCCTCTCTTTGATCACTTTGAACCTATGTTT