Detailed information on CNT3099597


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690003Oryza rufipogonOryza sativa18.6720.9799.11112forward
CNT30552427Oryza rufipogonOryza glaberrima27.339.3996.34164forward
CNT30574982Oryza rufipogonOryza barthii27.3331.5496.34164forward
CNT30115659Oryza rufipogonOryza nivara18.1728.5397.25109forward
CNT30603430Oryza rufipogonOryza punctata25.8331.1289.68155forward

Expression of CNT3099597

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRVSTSTHPHKMNTDQALASTSSGRSGAK*

>peptide 2 (85 aa)
MAAKRKAAAEATSAAARGVAAAPAAEMAATARTARMARALDPAAAITSIRWLVVGGGGGGGGEKVLEGGGIMEREREDVLLVLVWR

>peptide 3 (79 aa)
MAVIITIIIMVINRKIVDLGEGGTSRISHRRRDGTGLSGGWRRRGRRRRRRRAPRRGASRPRRRRRWRRPPGRRGWRGP*

Sequence

>CNT3099597
AACTGAGAATGAAATGGAAGCAGTAATAATATACTACTAGTAATCAGTAGCGGAAGAACACTCAGATGAGAGTATCTACAAGCACACACCCACACAAAAT
GAATACAGATCAAGCACTAGCTAGTACTAGTAGCGGCAGATCTGGAGCAAAATGAGACACGAATAATAATAATAATAATAATAATAATAATAATAATAAC
CAACAAATTTCGCTAGCTAGCGATGGCAGTAATAATAACAATAATAATAATGGTGATAAATAGAAAAATAGTAGATCTAGGCGAAGGCGGCACTAGCCGG
ATCTCCCATCGACGGAGAGACGGGACGGGGCTCAGTGGCGGATGGCGGCGAAGAGGAAGGCGGCGGCGGAGGCGACGAGCGCCGCGGCGAGGGGCGTCGC
GGCCGCGCCGGCGGCGGAGATGGCGGCGACCGCCAGGACGGCGAGGATGGCGAGGGCCTTAGATCCGGCGGCGGCCATCACTTCGATTCGGTGGCTGGTC
GTCGGCGGAGGCGGCGGCGGCGGCGGAGAGAAGGTTCTAGAAGGCGGAGGAATAATGGAGAGAGAGAGAGAGGATGTTTTGCTTGTGCTCGTGTGGAGGT