Detailed information on CNT3099480


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690260Oryza rufipogonOryza sativa67.1236.2499.69635forward
CNT30369188Oryza rufipogonOryza glumipatula67.2380.5196.86636reverse complement

Expression of CNT3099480

Peptides detected in this lncRNA

>peptide 1 (91 aa)
PLPILSNTRVAASLLRRHRRWWPPRLDVVVYACACSRWRDAAVSIVQPPLECERTMFPSSLKQLEMIFFSFRGRKIWMLDLQLFIEEMFLI*

>peptide 2 (50 aa)
SSPYTIQHSCRCQSTATSSAVVAAAAGRGGLRLRLQPVAGRRGLHRAAAA*

>peptide 3 (61 aa)
MPPSSSRVAARCRWRVLGAQWSGKGLTRGPHNFLFTFSVTDRWVLRFLFFLNELPHKCHVR*

>peptide 4 (65 aa)
LSLYYPTLVSLPVYCDVIGGGGRRGWTWWSTPAPAAGGGTPRSPSCSRRLSASGPCSPHRLSSWR*

>peptide 5 (62 aa)
MDSDADAPTCFCSADVLLPLPTPSSSNVFSADAALQLPRRRAMQVESPRGAVERQRVDTWAP*

Sequence

>CNT3099480
TCCTCTCCCTATACTATCCAACACTCGTGTCGCTGCCAGTCTACTGCGACGTCATCGGCGGTGGTGGCCGCCGCGGCTGGACGTGGTGGTCTACGCCTGC
GCCTGCAGCCGGTGGCGGGACGCCGCGGTCTCCATCGTGCAGCCGCCGCTTGAGTGCGAGCGGACCATGTTCCCCTCATCGCTTAAGCAGCTGGAGATGA
TTTTTTTTTCTTTCCGCGGGAGAAAAATCTGGATGCTCGATTTGCAGCTGTTCATTGAGGAAATGTTTTTGATTTGATTTGATTCAGAAAGTGAGATTTT
CTTTTTTGTTGCTGCATCTGTCTGGATGTATTAAAAGTTGAATATATTTGTTCCGCTCCCGACATCGTCGACTGCTCTGCCACCTCCTCAACCTCATTGG
GTTCCCTGCCGTCCTCTGCCTCCTCGGCTGCCCCTGGAAGCTCTCCTGCTCAACTCTCAAGGCCGACGCCCGGCGCTGAAGATGGACTCGGACGCCGACG
CCCCGACCTGCTTCTGCTCCGCCGACGTCCTCCTCCCACTGCCGACGCCCTCCAGCTCCAACGTCTTCTCCGCCGATGCCGCCCTCCAGCTCCCGCGTCG
CCGCGCGATGCAGGTGGAGAGTCCTCGGGGCGCAGTGGAGCGGCAAAGGGTTGACACGTGGGCCCCATAATTTTTTATTTACCTTTAGTGTAACTGACAG
GTGGGTCCTACGATTTTTATTTTTTTTAAACGAATTGCCACACAAGTGCCACGTCAGATGAAGACCGAGTCAAATTAGCCACGTAGGCGCCACGTCAGCC
AAAACCACCGTCCAAACCGCCGAGGGACCTTATCTGCACCGGTTTTGATAGTTGAGGGACGTGTTGTATCTGTTTTTCTGGTTGAAGGATGAAAATCAGA
TTCGTTGACAAGTTAAAGGACCACAAGTGAACTTATTCCTTTTTGC