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Detailed information on CNT3098426


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378674Solanum tuberosumArabidopsis thaliana27.0710.8895.2229reverse complement
CNT30618774Solanum tuberosumSesamum indicum26.482.2396.43224reverse complement
CNT30220384Solanum tuberosumHordeum vulgare6.8621.2589.6658reverse complement
CNT30592653Solanum tuberosumMusa acuminata25.659.0591.71217reverse complement
CNT30680520Solanum tuberosumTriticum urartu27.428.0297.84232reverse complement
CNT30100822Solanum tuberosumOryza rufipogon20.3366.6795.35172reverse complement
CNT30578173Solanum tuberosumOryza barthii27.426.8396.98232reverse complement
CNT30115142Solanum tuberosumEutrema salsugineum13.8328.7597.44117forward

Expression of CNT3098426

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLILANASKRSENGIRSPKWVPRRVASG*

>peptide 2 (65 aa)
MGLPGTPQDQKDSIYLIFKDEIDELDLSQRLKTVRKWNKESEVGSPESGFWLMIVEETIRFWGSG*

>peptide 3 (73 aa)
PGIIERKSVHEPMQTGLKAKNKFLFLSSNWTNFLLLLKTCLQKTTNYFLPGSGILLSITLYFFLFFFLKVAQG*

Sequence

>CNT3098426
CCCCTGGGATTATTGAACGTAAATCAGTGCACGAGCCTATGCAAACAGGTTTAAAAGCGAAAAATAAATTCCTTTTTTTGAGCTCCAATTGGACAAATTT
TCTTTTACTTTTGAAGACTTGCCTACAGAAAACAACGAATTACTTTCTGCCAGGCTCAGGAATTCTACTTTCTATTACTTTATATTTTTTTTTATTTTTT
TTTCTGAAAGTAGCGCAAGGCTAGCCGAGGCTGCTGGACCACCAGATTGTTGGACTGGCACCACAGACGAGAAGCTTTTACGTATTACGGAAAAGCAACT
CAACCGAATCGCTGAGGAAAGAAATGCCCTAGCCGAAATTTTGAAAGGGCTACTTTCTTTGGCATGGGGCTGCCGGGCACTCCCCAAGACCAAAAAGACA
GCATCTATCTCATTTTCAAGGATGAGATAGATGAGCTTGATCTTAGCCAACGCCTCAAAACGGTCCGAAAATGGAATAAGGAGTCCGAAGTGGGTTCCCC
GGAGAGTGGCTTCTGGTTGATGATAGTCGAAGAGACTATTAGGTTTTGGGGCTCGGGATAATATTTCCCTTGACTGTAAGGAAGGGAAACATCGTTTTTT
TCATTCTTTTCTTATGAGGTCGTGTACAACAACCTTAACCGCACAAGCCTGGGCTGGGCCTACCTCCATCCCTAGAGGAGCCGTATGAGGCGGAAGCTCC
ACGTACGGTTTTGAAGCCGAGCCTTTCCAGCAATGGGGCCTAGGGACCGATATGATGATTGGTTTAGGTAGGGCGGCCGGCCTACTACGGGCACCTGTAG
GGATTAGTGTGTGAGACCGCAATCCACAAACTGACGCATGGAACTC