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Detailed information on CNT3097013


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FHW7|SKP1B_ARATH, E-value = 4e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671810Solanum tuberosumSetaria viridis19.3734.8286.0586forward
CNT30535942Solanum tuberosumEucalyptus grandis28.1526.8284.8125forward
CNT30315801Solanum tuberosumCorylus avellana24.112.9190.65107forward
CNT30500911Solanum tuberosumCoffea canephora26.5822.7888.14118forward
CNT30380944Solanum tuberosumManihot esculenta29.959.5884.96133forward
CNT30403855Solanum tuberosumBeta vulgaris18.2422.2586.4281forward
CNT30628805Solanum tuberosumVigna unguiculata28.8323.9785.94128forward
CNT30493928Solanum tuberosumOlea europaea37.8423.681.55168forward
CNT3059890Solanum tuberosumArabidopsis lyrata28.1517.3984.8125forward
CNT30137317Solanum tuberosumLolium perenne18.0226.6787.580forward
CNT3054174Solanum tuberosumAmborella trichopoda22.0712.0785.7198forward
CNT3039962Solanum tuberosumMarchantia polymorpha26.86.6982.35119forward

Expression of CNT3097013

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MKMDIGYQHDFTFNFYLEHKKPRHNRAKDVQQPKPEGPRNNSHTLTNISYS*

Sequence

>CNT3097013
AAGCTAAATGCACCAGTGATGATAAACACAACAAACAATATGAATTTCCAATAATAGATCAATGAAAATGGACATCGGCTACCAACATGATTTTACCTTC
AATTTTTACTTAGAACATAAGAAACCACGGCATAACAGAGCAAAAGATGTTCAACAGCCAAAGCCAGAAGGTCCGAGAAACAACAGTCACACACTTACTA
ATATAAGTTATTCATAGCATCTACTAAAGTATATTGCAGATCTATCTACAGATATGGACGCTTAACAGACTCAAATTCACTCGAATGCCCAGGCATTCTC
CCTCCTGACTTCTTCCTCTTCCTCAGGAGTGAAGTCATTCTTGATGTTGAACGTCTTGCGTATCTCCTCAGGCGTCTTTCCCTTAATCATGTCTGCTACT
GTCTGACATGTCAGATCTAGCAAGCTCTTTATGTTTAAATAGTT