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Detailed information on CNT3096738


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FHW7|SKP1B_ARATH, E-value = 2e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516841Solanum tuberosumJuglans regia24.0614.9485.12121forward
CNT30259882Solanum tuberosumBrassica rapa26.6435.0882.09134forward

Expression of CNT3096738

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MDISYQHDFIFNFYLEHNKPWHNRAKEVQQPKPEGPRNNSHTLTNISYS*

>peptide 2 (36 aa)
PSLTSFCDRKQHNQTNAVRLNAPVRINTRNNMNFQK*

Sequence

>CNT3096738
CCTAGTCTAACATCCTTCTGTGACAGAAAACAGCACAACCAAACCAATGCAGTAAGACTAAATGCACCAGTGAGGATAAACACAAGAAACAATATGAATT
TCCAAAAATAGATCAACGAAAATGGACATCAGCTACCAACATGATTTTATCTTCAATTTTTACTTAGAACACAACAAACCATGGCATAACAGAGCAAAAG
AGGTTCAACAGCCAAAGCCAGAAGGTCCGAGAAACAACAGTCACACACTTACTAATATAAGTTATTCATAGCATCTACTAAAGTATATTGCAGATCTATC
TACAGATATGGACGCTTAACAGACTCAAATTCACTCGAATGCCCAGGCATTCTCCCTCCTGACTTCTTCCTCTTCCTCAGGAGTGAAGTCATTCTTGATG
TTGAACGTCTTGCGTATCTCCTCAGGCGTCTTTCCCTTAATCATGTCTGCTACTGTCTGACATGTCAGATCTAGCAAGCTCTTTATGTTTAAATAGTTAG
CAG