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Detailed information on CNT3093146


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372815Solanum tuberosumArabidopsis thaliana29.1936.0784.16101forward
CNT30268339Solanum tuberosumChenopodium quinoa22.839.7186.0879forward
CNT30379481Solanum tuberosumManihot esculenta30.3547.9584.76105forward
CNT30524716Solanum tuberosumPhaseolus vulgaris30.3513.4188.57105forward
CNT30490066Solanum tuberosumOlea europaea26.0110.0988.8990forward
CNT30712487Solanum tuberosumGlycine max32.6614.8185.84113forward
CNT3088037Solanum tuberosumVigna radiata45.0911.6185.26156forward
CNT30541340Solanum tuberosumBrassica napus30.0616.2584.62104forward
CNT30215929Solanum tuberosumHelianthus annuus25.729.4488.7689forward
CNT30622201Solanum tuberosumCajanus cajan13.8721.6291.6748forward
CNT30357405Solanum tuberosumLactuca sativa29.1914.4383.17101forward
CNT30119382Solanum tuberosumCitrus clementina37.8614.4186.26131forward

Expression of CNT3093146

Peptides detected in this lncRNA

>peptide 1 (43 aa)
HGRFTGSRLETTWMIFPSTEIPSVPTGLTSASKMPRVESYLRR*

>peptide 2 (64 aa)
PWEVHRVTVGDDLDDFSIDRDSISANRLDVSIKDAKGGVIFEKVRSLLDTTSVIDGNDIKRASE*

Sequence

>CNT3093146
CCCATGGGAGGTTCACAGGGTCACGGTTGGAGACGACTTGGATGATTTTTCCATCGACAGAGATTCCATCAGTGCCAACCGGCTTGACGTCAGCATCAAA
GATGCCAAGGGTGGAGTCATATTTGAGAAGGTGAGAAGCTTGCTTGACACCACCAGTGTCATTGATGGCAATGACATCAAGAGGGCGAGTGAATGAGGAA
CCTTAAGAGAAGTGTTGGCTACTGAGAGAGCAGCCATTGTTCTTTTAGAGAATTACAGCAACAGCAGTACAGTAATGTGTTGATGAAGAAAAATATGGAA
GTTTATGAATGAATGAATGGAGGGAAGAAAATGGATGAGATTATGG