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Detailed information on CNT3092650


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71V09|H4_CAPAN, E-value = 7e-41

BLAST vs NONCODE:
NONGMAT001327, E-value = 1e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317753Solanum tuberosumCorylus avellana50.5227.8780.93194forward
CNT30549690Solanum tuberosumIpomoea triloba26.5624.2987.25102forward
CNT30701199Solanum tuberosumQuercus lobata23.188.0884.2789forward
CNT30375418Solanum tuberosumArabidopsis thaliana23.9638.9883.792forward
CNT30617135Solanum tuberosumSesamum indicum38.2814.6681.63147forward
CNT30198310Solanum tuberosumPisum sativum56.7727.6384.4218forward
CNT30504865Solanum tuberosumNicotiana attenuata67.9750.9882.38261forward
CNT30712284Solanum tuberosumGlycine max27.0822.1383.65104forward
CNT3042757Solanum tuberosumPrunus dulcis52.8633.583.25203forward
CNT30172429Solanum tuberosumTrifolium pratense57.0333.8580.82219forward
CNT30252948Solanum tuberosumAvena sativa30.9922.9783.19119forward
CNT30261175Solanum tuberosumBrassica rapa21.0917.1686.4281forward
CNT30611168Solanum tuberosumArabis alpina2529.6386.4696forward
CNT30211420Solanum tuberosumHelianthus annuus56.7743.9583.94218forward
CNT30619612Solanum tuberosumCajanus cajan35.6832.783.94137forward
CNT30357929Solanum tuberosumLactuca sativa22.419.287.2186forward
CNT30414711Solanum tuberosumPapaver somniferum2510.0487.596forward
CNT3052246Solanum tuberosumAmborella trichopoda50.5216.179.38194forward
CNT3024855Solanum tuberosumPopulus trichocarpa26.317.2185.15101forward

Expression of CNT3092650

Peptides detected in this lncRNA

>peptide 1 (34 aa)
LKHRNKIFHRFRNITNYINKTKILLIPNNPDLKS*

Sequence

>CNT3092650
TTGAAACACAGAAATAAGATATTTCATAGATTCAGAAACATAACCAATTACATCAACAAAACTAAAATACTACTAATACCCAATAACCCAGATCTAAAGT
CTTAACCACCGAAACCATAGAGAGTCCTTCCTTGTCTCTTCAAAGCATAAACAACATCCATAGCAGTAACAGAATCACGAATCACATTTTCCAAAAAGAT
CTTAAGAACACCTCTTGTCTCTTCATAAATCAACCCACTGATTCTCTTCACTCCACCTCTTCTCGCCAACCTCCTAATAGCAGGCTTGGTAATCCCCTGG
ATGTTGTCACGAAGCACCTTGCGATGACGTTTTGCTCCACCCTTTCCTAATCCCTTGCCACCCTTTCCACGGCCAGACATTTTT