« Back to Vigna radiata search


Detailed information on CNT3088008


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S307|BZR1_ARATH, E-value = 6e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525060Vigna radiataPhaseolus vulgaris46.960.787.78712forward
CNT30628749Vigna radiataVigna unguiculata25.5642.3196.91388forward
CNT30710501Vigna radiataGlycine max20.7542.4585.4315forward

Expression of CNT3088008

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVEVATWWRREGLEGAEVAKRGWRKEALERESKSA

>peptide 2 (59 aa)
MSLYHEITEMLRDIKFKIRNMTNKSCDDKYPPKIMQKDLHITHLGDSDFLSSTRREERG*

Sequence

>CNT3088008
TAATATTTTGGTACTCTTTCTCCGAGTTCATGAATTATAATAAAAAAAATTAGTCACATTGACAAAAAACAACCCATACATGTCTCTTTATCATGAGATA
ACAGAAATGCTGCGGGATATCAAATTCAAAATTAGAAACATGACTAATAAATCATGCGATGACAAATATCCTCCGAAAATAATGCAAAAAGATTTGCACA
TTACACACTTAGGAGACTCTGACTTCCTATCCTCCACCAGAAGAGAAGAGAGAGGATAAGTATATCCCATGATCTTCAAACCTGCTTTTTAGTTTCTCGC
TTTTTGGCAAAATCACTAACTGCCAATGCCGACATAGATCATCACACTTGCATATCAGAGTTGTTTCATAGTATCTCAGCAACATACAAGTTAGAGTCGA
GAATATCCCACAAGAAGGAAACGTAGTAAAGCTTATTAAGCCTAAGTATTCCGTTAACAAGTGCATATCCCACAAGAAGGAAACATAGTAAAGCTTATTA
AGGCTAAGTATTCCGTTAACAAGTGCAGCATACTTAGCATAAAATGACTATACATTGAAACAAAAATGAGCCAGTTTAGAACAAGAAGTTCAAAGACAGC
TCAATCAAAAAATTAAATTGAAAGCTATAGATAAATGAAAACAAGCTCCCAACCAATGCTCAAATCATCACATAATCATTAATTTTCCCACTATCTCACA
TCTTCTCACTTGACATTGGTGATTTATATTATAGGCATAGAAAGCTTCCCACTCTTAGCACATATAAATTCAAGAGTATAAGTAGAACGATGAACAATGG
ACAAGAAAGGAACATGAATAATGAATAAGAGGATAAAATTAAGAATATCACCGAGTTTTCCCTAGCCTTAGAAAGTGGAGATTAAAGTCTGAAGAAAACA
CTTGGAGAAGATTGCTTCTAATGCAACCTTTGAACAATTAACATGGCATTTTAATGAAGTCAAATTCCATCACTGGTATATAAGAGACACTGTACACATA
ATTAGAGAGAAAATATATAAATATATGAATAACAACCAATTAATTGCCCGGAAGAAAGCAAATGGAGAGGATTGCAATTGCATCTGTGATACTTTAAGGT
AGTTGTGGAGAACAAATCAAGCTTTTCCCAATCCCAGAGTAAGCTCCAAATCATCCATTCCCACCTCGTGTATTCTCTCACCCTCCCAAGGCTTTACTCT
GCCATTCTCGAATTCAAAATCGGAGACTCCTCTGCCTATCTCCGCAATGGAACCCCACTGTACGCCCTCCTGAGCAGGGATCTGGTGCATAGCGGGTTTC
ATGAGGTTGAAGGTAGGGGAAGGGGGACCGGCGGCGGTCTGACCCTGAAAACTAACCCAACGGCCGGAGGCAGAGTCGACGGTGGAAGCGTCAGACTCGT
CGCACTCAGGGATGGTGGAAGTCGCGACGTGGTGGCGGCGCGAGGGACTGGAGGGGGCGGAGGTGGCGAAAAGAGGGTGGCGGAAGGAGGCGTTGGAGAG
GGAATCGAAGTCAGCCTT