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Detailed information on CNT3086649


BLAST search results

BLAST vs Swiss-Prot:
sp|O65819|H2B3_SOLLC, E-value = 2e-58

BLAST vs NONCODE:
NONGMAT000269, E-value = 3e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Vigna radiataOryza sativa26.1430.8182.56195forward
CNT30675682Vigna radiataSetaria viridis26.1443.0582.05195forward
CNT30523142Vigna radiataSetaria italica32.4446.5482.64242forward
CNT30315505Vigna radiataCorylus avellana23.1937.8686.71173forward
CNT30518328Vigna radiataJuglans regia36.4652.5185.29272forward
CNT30702570Vigna radiataQuercus lobata17.5626.289.31131forward
CNT30618876Vigna radiataSesamum indicum35.5216.381.89265forward
CNT3072234Vigna radiataQuercus suber20.3824.1386.18152forward
CNT30381273Vigna radiataManihot esculenta20.3842.5882.24152forward
CNT30526697Vigna radiataPhaseolus vulgaris23.1965.7889.6173forward
CNT30630598Vigna radiataVigna unguiculata68.591.7492.37511forward
CNT30196132Vigna radiataPisum sativum21.5833.9786.96161forward
CNT30163367Vigna radiataPistacia vera33.6530.1380.48251forward
CNT3094085Vigna radiataSolanum tuberosum19.9729.585.91149forward
CNT30180643Vigna radiataSecale cereale35.6632.1682.71266forward
CNT30301816Vigna radiataTriticum aestivum35.6638.2783.83266forward
CNT30220727Vigna radiataHordeum vulgare35.6634.183.46266forward
CNT30396055Vigna radiataTriticum turgidum35.2532.1983.65263forward
CNT30565715Vigna radiataActinidia chinensis37.5335.6783.93280forward
CNT30586986Vigna radiataMusa acuminata33.5170.6282.8250forward
CNT30510004Vigna radiataSolanum lycopersicum1331.885.5797forward
CNT30552027Vigna radiataOryza glaberrima35.6649.3581.95266forward
CNT30171046Vigna radiataTrifolium pratense36.0675.7787.36269forward
CNT30443203Vigna radiataAegilops tauschii35.6640.5583.08266forward
CNT30240867Vigna radiataAvena sativa35.6637.5782.71266forward
CNT30660053Vigna radiataTriticum dicoccoides35.6640.1283.46266forward
CNT30597299Vigna radiataFraxinus excelsior26.8136.4385200forward
CNT30451774Vigna radiataSaccharum spontaneum34.9929.5982.76261forward
CNT30130711Vigna radiataLolium perenne35.6639.1282.33266forward
CNT303693Vigna radiataZea mays16.7636.2384125forward
CNT30606042Vigna radiataGossypium raimondii17.5642.9590.08131forward
CNT3066775Vigna radiataLeersia perrieri15.9530.9987.39119forward
CNT30205622Vigna radiataHelianthus annuus13.1436.382.6598forward
CNT30129800Vigna radiataCorymbia citriodora36.8634.1685.82275forward
CNT30684130Vigna radiataTriticum urartu35.6636.6983.08266forward
CNT30722188Vigna radiataTriticum spelta35.6638.9583.46266forward
CNT30346527Vigna radiataEragrostis tef23.7383.8980.23177forward
CNT30363575Vigna radiataSorghum bicolor34.8528.282.31260forward
CNT30359864Vigna radiataLactuca sativa15.9528.7486.55119forward
CNT30369169Vigna radiataOryza glumipatula35.6646.4283.46266forward
CNT30429187Vigna radiataPapaver somniferum26.8119.1983200forward
CNT30570929Vigna radiataVitis vinifera37.5341.7384.29280forward
CNT3052765Vigna radiataAmborella trichopoda15.1522.2490.27113forward
CNT3024772Vigna radiataPopulus trichocarpa24.831.282.16185forward
CNT30327286Vigna radiataAsparagus officinalis36.8630.4286.18275forward
CNT30103076Vigna radiataOryza rufipogon16.7620.7384125forward
CNT30576366Vigna radiataOryza barthii15.9522.7188.24119forward
CNT30496069Vigna radiataDigitaria exilis35.6633.3382.71266forward
CNT30174435Vigna radiataVigna angularis23.1925.8288.44173forward
CNT30557628Vigna radiataPanicum hallii15.9521.3683.19119forward
CNT30724478Vigna radiataLupinus angustifolius21.9827.283.54164forward
CNT3065708Vigna radiataSelaginella moellendorffii16.7636.0284.8125forward
CNT30114697Vigna radiataEutrema salsugineum37.5345.6881.43280forward

Expression of CNT3086649

Peptides detected in this lncRNA

>peptide 1 (62 aa)
IQLIKFIYIIERKHSRSHKNMLELRKTSKTKKKKKKELIFKKLLNGKTKIKRLRYVFKCSRK*

Sequence

>CNT3086649
TATCCAATTAATAAAATTCATTTATATAATAGAACGCAAGCACAGTCGTTCCCATAAGAACATGTTAGAGTTACGGAAAACTTCCAAAACAAAAAAAAAA
AAAAAAAAAGAACTCATCTTCAAGAAATTGCTAAACGGGAAGACCAAAATTAAAAGACTGCGATATGTATTTAAATGTTCGAGAAAATGAGAAATGCCAT
TAAAAAGAACGATCCAAAATATACATCAAGAAAACCCTAACTCTCATAAAAGATCTTAAGAACTGGTAAATTTGGTGACTGCCTTGGTGCCTTCGGAGAC
GGCGTGCTTGGCAAGCTCACCAGGGAGGACAAGACGAACAGCGGTCTGGATCTCACGGGATGTAATGGTGGGCTTCTTGTTGTAACGGGCCAGTCTGGAT
GATTCTTGAGCAAGCTTCTCAAAGATATCATTGATGAAGCTGTTCATGATCCCCATTGCCTTGCTGGAGATCCCAATGTCAGGGTGAACCTGCTTGAGGA
CCTTGAAGATATAGATCTTGTAGGTTTCCACGCTCTTGGCCTTCTTCTTCTTCTTCTTGTCACCGGAGGTAGCATCCTTAGGGATCTTCTTCTCTGCTTT
GGTTTTCTCCGCCGGAGCCTTCTCTGCAGGCTTTTTCTCTGCGGGTTTCTTCTCACCCTTAGCCATGGATTTCTTACAGAAGGGTAGATGAAATTCAATT
CAACAGGACACAAGACAGAGAATGTGAAATCTGAATGATTTGGATT